miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 23362 0.67 0.907884
Target:  5'- uGGCGACCGccugcCGGUAUCaGGCGaUCAuCGa -3'
miRNA:   3'- uCUGCUGGCa----GCUAUAG-CUGC-AGU-GC- -5'
16407 5' -51.4 NC_004084.1 + 33336 0.67 0.907884
Target:  5'- uGACGACCGuaccaccacugUCGuuuucuUCGACGUCgACa -3'
miRNA:   3'- uCUGCUGGC-----------AGCuau---AGCUGCAG-UGc -5'
16407 5' -51.4 NC_004084.1 + 6795 0.67 0.907225
Target:  5'- gGGACGuucUCGaaggcaaUCGAUGUCGccagagACGUCACGa -3'
miRNA:   3'- -UCUGCu--GGC-------AGCUAUAGC------UGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 12132 0.67 0.901164
Target:  5'- cGACGAcuacgacuCCGUCGAcgaagcgAUgGAUGUCGCa -3'
miRNA:   3'- uCUGCU--------GGCAGCUa------UAgCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 4924 0.67 0.901164
Target:  5'- cGACGACU-UCGccGUCGACGUaCugGa -3'
miRNA:   3'- uCUGCUGGcAGCuaUAGCUGCA-GugC- -5'
16407 5' -51.4 NC_004084.1 + 23075 0.67 0.901164
Target:  5'- cGGCGACgCGaCGAgGUgGACGUCgGCGa -3'
miRNA:   3'- uCUGCUG-GCaGCUaUAgCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 49063 0.67 0.901164
Target:  5'- aAGAucgUGACCGUCGAcGUgCGACgGUCGgGa -3'
miRNA:   3'- -UCU---GCUGGCAGCUaUA-GCUG-CAGUgC- -5'
16407 5' -51.4 NC_004084.1 + 21768 0.67 0.901164
Target:  5'- cGGgGAUCGgCGGcAUCGACGUCGgGg -3'
miRNA:   3'- uCUgCUGGCaGCUaUAGCUGCAGUgC- -5'
16407 5' -51.4 NC_004084.1 + 17158 0.67 0.894174
Target:  5'- gGGACGAUCGcCGg---CGACGUCgaagGCGa -3'
miRNA:   3'- -UCUGCUGGCaGCuauaGCUGCAG----UGC- -5'
16407 5' -51.4 NC_004084.1 + 5359 0.67 0.894174
Target:  5'- cGAgGACUGggaCGAUcUCGACGUCGa- -3'
miRNA:   3'- uCUgCUGGCa--GCUAuAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 38357 0.67 0.894174
Target:  5'- cGGCG-UCGUCGGUAUCGACa--GCa -3'
miRNA:   3'- uCUGCuGGCAGCUAUAGCUGcagUGc -5'
16407 5' -51.4 NC_004084.1 + 15019 0.67 0.894174
Target:  5'- -uGCGGCuCGUCGAgcGUCGACGgcCACu -3'
miRNA:   3'- ucUGCUG-GCAGCUa-UAGCUGCa-GUGc -5'
16407 5' -51.4 NC_004084.1 + 4157 0.67 0.886918
Target:  5'- cAGACGGCCGa------UGACGUCGCGg -3'
miRNA:   3'- -UCUGCUGGCagcuauaGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 18797 0.67 0.886918
Target:  5'- cGAuCGACuCGUCGAg---GACGUCGCc -3'
miRNA:   3'- uCU-GCUG-GCAGCUauagCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 36155 0.67 0.886918
Target:  5'- --uCGACUGgaUCGAcGUCGACGUC-CGg -3'
miRNA:   3'- ucuGCUGGC--AGCUaUAGCUGCAGuGC- -5'
16407 5' -51.4 NC_004084.1 + 16914 0.68 0.877096
Target:  5'- cAGGCGAUCGuggccgggugcgguUCGGcAUCGgcggGCGUCGCGa -3'
miRNA:   3'- -UCUGCUGGC--------------AGCUaUAGC----UGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 49534 0.68 0.871629
Target:  5'- cGGACGAUCGagGugAUCGGCGUguCGa -3'
miRNA:   3'- -UCUGCUGGCagCuaUAGCUGCAguGC- -5'
16407 5' -51.4 NC_004084.1 + 22797 0.68 0.871629
Target:  5'- aGGaACGAagCGUCGAgag-GGCGUCACGg -3'
miRNA:   3'- -UC-UGCUg-GCAGCUauagCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 3814 0.68 0.863607
Target:  5'- cGGCGACC-UCGAUccagucuucGUCGACGcCgACGa -3'
miRNA:   3'- uCUGCUGGcAGCUA---------UAGCUGCaG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 21487 0.68 0.863607
Target:  5'- cGGCGAUCGccUCGGUugcGUCGuagGCGUCACc -3'
miRNA:   3'- uCUGCUGGC--AGCUA---UAGC---UGCAGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.