Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 16408 | 3' | -57.2 | NC_004084.1 | + | 11157 | 0.71 | 0.352902 |
|
Target: 5'- cCUCguAGUaGGCG-CCGGCGAgccGGUCGUa -3' miRNA: 3'- aGAG--UCAgCCGCuGGCCGCU---UCAGCA- -5' |
|||||||
| 16408 | 3' | -57.2 | NC_004084.1 | + | 35455 | 0.67 | 0.605412 |
|
Target: 5'- aCUCGGUCGGCc-UCGucGCGAGuGUCGUg -3' miRNA: 3'- aGAGUCAGCCGcuGGC--CGCUU-CAGCA- -5' |
|||||||
| 16408 | 3' | -57.2 | NC_004084.1 | + | 51240 | 0.66 | 0.626872 |
|
Target: 5'- cUCUCGGUacugauaGGCGGCuucgucagCGGCGAAcgcuguGUCGUc -3' miRNA: 3'- -AGAGUCAg------CCGCUG--------GCCGCUU------CAGCA- -5' |
|||||||
| 16408 | 3' | -57.2 | NC_004084.1 | + | 13252 | 0.66 | 0.64835 |
|
Target: 5'- aCUCAccgucGUCGG-GAUCgauGGUGAAGUCGUu -3' miRNA: 3'- aGAGU-----CAGCCgCUGG---CCGCUUCAGCA- -5' |
|||||||
| 16408 | 3' | -57.2 | NC_004084.1 | + | 54233 | 0.66 | 0.64835 |
|
Target: 5'- aUCUCGacGUCGgaGCGAucagcgccgUCGGCGAGGUUGa -3' miRNA: 3'- -AGAGU--CAGC--CGCU---------GGCCGCUUCAGCa -5' |
|||||||
| 16408 | 3' | -57.2 | NC_004084.1 | + | 18976 | 0.73 | 0.257536 |
|
Target: 5'- --cCAGUCGGCcGgCGGgGAAGUCGUa -3' miRNA: 3'- agaGUCAGCCGcUgGCCgCUUCAGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home