miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 47327 0.66 0.780695
Target:  5'- aCGGCGAUCUCGUCGcCGACcucaagcacauguuCGUCGg -3'
miRNA:   3'- -GCUGCUAGGGCGGCuGCUGcu------------GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21957 0.66 0.780695
Target:  5'- gGACGAcgUCuCCGCCGAgaucgacacggugcaGACGGCGUa- -3'
miRNA:   3'- gCUGCU--AG-GGCGGCUg--------------CUGCUGUAgu -5'
16408 5' -55.5 NC_004084.1 + 12209 0.66 0.779721
Target:  5'- uGAUGAUCgUCGacgcauCCGACGACGAUcUCGc -3'
miRNA:   3'- gCUGCUAG-GGC------GGCUGCUGCUGuAGU- -5'
16408 5' -55.5 NC_004084.1 + 47303 0.66 0.779721
Target:  5'- gGAcCGA-CUCGuCCGACGA-GACGUCGa -3'
miRNA:   3'- gCU-GCUaGGGC-GGCUGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 9682 0.66 0.779721
Target:  5'- -uACGAUCCCGagGAUGAgGugGUCc -3'
miRNA:   3'- gcUGCUAGGGCggCUGCUgCugUAGu -5'
16408 5' -55.5 NC_004084.1 + 9448 0.66 0.779721
Target:  5'- -uGCGGga-CGCCGuaguCGGCGGCAUCGu -3'
miRNA:   3'- gcUGCUaggGCGGCu---GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 37339 0.66 0.779721
Target:  5'- uCGGCGAUCCCGaCGACGcccagcuCGAag-CAc -3'
miRNA:   3'- -GCUGCUAGGGCgGCUGCu------GCUguaGU- -5'
16408 5' -55.5 NC_004084.1 + 58046 0.66 0.778746
Target:  5'- uCGAUGAaguucUCCCgguaggcGCCGuguuCGACGGCGUUg -3'
miRNA:   3'- -GCUGCU-----AGGG-------CGGCu---GCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 21281 0.66 0.776791
Target:  5'- aCGACcaGAUCuuCCGCCGcgugauggaaaccaGCGGCGuCAUCGa -3'
miRNA:   3'- -GCUG--CUAG--GGCGGC--------------UGCUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 17510 0.66 0.773849
Target:  5'- uGACGGcaUCCCGUCGuCGGauaucgauguugaaGGCGUCAc -3'
miRNA:   3'- gCUGCU--AGGGCGGCuGCUg-------------CUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 27291 0.66 0.773849
Target:  5'- uGACGAUCgcggCGCCGcuguucaucauccugGCGACGuACGUCc -3'
miRNA:   3'- gCUGCUAGg---GCGGC---------------UGCUGC-UGUAGu -5'
16408 5' -55.5 NC_004084.1 + 30267 0.66 0.769906
Target:  5'- uGGCGAUUUCGgaCGAauCGGCGugGUCGg -3'
miRNA:   3'- gCUGCUAGGGCg-GCU--GCUGCugUAGU- -5'
16408 5' -55.5 NC_004084.1 + 4451 0.66 0.769906
Target:  5'- uCGACGcgCCCGaCUGgACGAuCGAguUCGa -3'
miRNA:   3'- -GCUGCuaGGGC-GGC-UGCU-GCUguAGU- -5'
16408 5' -55.5 NC_004084.1 + 21754 0.66 0.769906
Target:  5'- gGAcauCGAUgCUGCCGAUGuCGAgAUCGa -3'
miRNA:   3'- gCU---GCUAgGGCGGCUGCuGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 16846 0.66 0.769906
Target:  5'- gCGGgaGAUCCCGUCGAUGAUcGCAa-- -3'
miRNA:   3'- -GCUg-CUAGGGCGGCUGCUGcUGUagu -5'
16408 5' -55.5 NC_004084.1 + 28989 0.66 0.769906
Target:  5'- gCGGUGAagCUCGCCGuCGACGGCAa-- -3'
miRNA:   3'- -GCUGCUa-GGGCGGCuGCUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 55903 0.66 0.769906
Target:  5'- aCGACGAU-CCGCCGGaggaGugGGCc--- -3'
miRNA:   3'- -GCUGCUAgGGCGGCUg---CugCUGuagu -5'
16408 5' -55.5 NC_004084.1 + 3490 0.66 0.769906
Target:  5'- gGAgGAUCCCGaUCGA-GACGGCGagCAg -3'
miRNA:   3'- gCUgCUAGGGC-GGCUgCUGCUGUa-GU- -5'
16408 5' -55.5 NC_004084.1 + 45974 0.66 0.769906
Target:  5'- uCGACGAUCggcaCGUCGACG-CGAuCAUgGa -3'
miRNA:   3'- -GCUGCUAGg---GCGGCUGCuGCU-GUAgU- -5'
16408 5' -55.5 NC_004084.1 + 29068 0.66 0.769906
Target:  5'- gCGACcg-CCCGCuCGGgGGCGuCGUCGc -3'
miRNA:   3'- -GCUGcuaGGGCG-GCUgCUGCuGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.