miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 47510 0.66 0.739689
Target:  5'- aCGACGAacucCCCGaucgggaguacCCGACGAuCGcCAUCAu -3'
miRNA:   3'- -GCUGCUa---GGGC-----------GGCUGCU-GCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 52127 0.66 0.749879
Target:  5'- aCGGCGGUUaCGCCGACuucugcguCGugAUCAu -3'
miRNA:   3'- -GCUGCUAGgGCGGCUGcu------GCugUAGU- -5'
16408 5' -55.5 NC_004084.1 + 45974 0.66 0.769906
Target:  5'- uCGACGAUCggcaCGUCGACG-CGAuCAUgGa -3'
miRNA:   3'- -GCUGCUAGg---GCGGCUGCuGCU-GUAgU- -5'
16408 5' -55.5 NC_004084.1 + 21754 0.66 0.769906
Target:  5'- gGAcauCGAUgCUGCCGAUGuCGAgAUCGa -3'
miRNA:   3'- gCU---GCUAgGGCGGCUGCuGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 19539 0.66 0.748865
Target:  5'- aGACGcugucuucuUCCCGCaacucuggcucgaCGAgGACGACGUCc -3'
miRNA:   3'- gCUGCu--------AGGGCG-------------GCUgCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 1450 0.66 0.753924
Target:  5'- cCGGCGAUccuggacuacugggaCCagcaguucagCGCCGACGACGACu--- -3'
miRNA:   3'- -GCUGCUA---------------GG----------GCGGCUGCUGCUGuagu -5'
16408 5' -55.5 NC_004084.1 + 15696 0.66 0.749879
Target:  5'- aGcCGAUCaacuCGCCGACG-CGACAgggUCGu -3'
miRNA:   3'- gCuGCUAGg---GCGGCUGCuGCUGU---AGU- -5'
16408 5' -55.5 NC_004084.1 + 7654 0.66 0.739689
Target:  5'- uGACGAagagCCgGaCGACGGCGAaGUCAa -3'
miRNA:   3'- gCUGCUa---GGgCgGCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 16846 0.66 0.769906
Target:  5'- gCGGgaGAUCCCGUCGAUGAUcGCAa-- -3'
miRNA:   3'- -GCUg-CUAGGGCGGCUGCUGcUGUagu -5'
16408 5' -55.5 NC_004084.1 + 50859 0.66 0.759955
Target:  5'- -aACGAUUCgGCCGACGGuucauCGGCGUa- -3'
miRNA:   3'- gcUGCUAGGgCGGCUGCU-----GCUGUAgu -5'
16408 5' -55.5 NC_004084.1 + 39181 0.66 0.766934
Target:  5'- aCGGCGGUUaaggggugccagggCCGaugaCGcACGGCGACAUCu -3'
miRNA:   3'- -GCUGCUAG--------------GGCg---GC-UGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 3490 0.66 0.769906
Target:  5'- gGAgGAUCCCGaUCGA-GACGGCGagCAg -3'
miRNA:   3'- gCUgCUAGGGC-GGCUgCUGCUGUa-GU- -5'
16408 5' -55.5 NC_004084.1 + 4451 0.66 0.769906
Target:  5'- uCGACGcgCCCGaCUGgACGAuCGAguUCGa -3'
miRNA:   3'- -GCUGCuaGGGC-GGC-UGCU-GCUguAGU- -5'
16408 5' -55.5 NC_004084.1 + 28803 0.66 0.749879
Target:  5'- cCGACagccaGGUgCCGuuGugGGCGAgCAUCGc -3'
miRNA:   3'- -GCUG-----CUAgGGCggCugCUGCU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 46275 0.66 0.749879
Target:  5'- uGACcuGAUCaUCGCCGAUGGCGGucaagaacccCGUCAg -3'
miRNA:   3'- gCUG--CUAG-GGCGGCUGCUGCU----------GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 29068 0.66 0.769906
Target:  5'- gCGACcg-CCCGCuCGGgGGCGuCGUCGc -3'
miRNA:   3'- -GCUGcuaGGGCG-GCUgCUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 28989 0.66 0.769906
Target:  5'- gCGGUGAagCUCGCCGuCGACGGCAa-- -3'
miRNA:   3'- -GCUGCUa-GGGCGGCuGCUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 1000 0.66 0.759955
Target:  5'- aCGACGAUCaCGCUGGCGuaccUGAUcgCGg -3'
miRNA:   3'- -GCUGCUAGgGCGGCUGCu---GCUGuaGU- -5'
16408 5' -55.5 NC_004084.1 + 56181 0.66 0.753924
Target:  5'- cCGAggaGAUCuCCGCgcuggccgaagcgagCGGCGAgGACAUCGa -3'
miRNA:   3'- -GCUg--CUAG-GGCG---------------GCUGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 30267 0.66 0.769906
Target:  5'- uGGCGAUUUCGgaCGAauCGGCGugGUCGg -3'
miRNA:   3'- gCUGCUAGGGCg-GCU--GCUGCugUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.