miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 19630 0.67 0.719008
Target:  5'- -aGCGAguUCCgGCuCGACGACGAUggCGu -3'
miRNA:   3'- gcUGCU--AGGgCG-GCUGCUGCUGuaGU- -5'
16408 5' -55.5 NC_004084.1 + 16915 0.67 0.729395
Target:  5'- aGGCGAUCgUgGCCGgguGCGGuuCGGCAUCGg -3'
miRNA:   3'- gCUGCUAG-GgCGGC---UGCU--GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 3013 0.67 0.708539
Target:  5'- cCGGCGAUCauGCCGAguauguCGGCGAUAcCGg -3'
miRNA:   3'- -GCUGCUAGggCGGCU------GCUGCUGUaGU- -5'
16408 5' -55.5 NC_004084.1 + 9029 0.67 0.72836
Target:  5'- aCGACGAcuacgaaUCCCGCauCGAgCGgguagagucggGCGACGUCGa -3'
miRNA:   3'- -GCUGCU-------AGGGCG--GCU-GC-----------UGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 33252 0.67 0.729395
Target:  5'- uCGAUGAggaCGUCGAgGACGuCGUCAg -3'
miRNA:   3'- -GCUGCUaggGCGGCUgCUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21222 0.67 0.729395
Target:  5'- aGGCGGuacuUCCCGUCGucggucuucuCGAUGAUGUCGa -3'
miRNA:   3'- gCUGCU----AGGGCGGCu---------GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 54246 0.67 0.708539
Target:  5'- -aGCGAUCagCGCCGuCGGCGAgGUUg -3'
miRNA:   3'- gcUGCUAGg-GCGGCuGCUGCUgUAGu -5'
16408 5' -55.5 NC_004084.1 + 20097 0.67 0.729395
Target:  5'- aGACGA--CCGUCGAUauCGACGUCAc -3'
miRNA:   3'- gCUGCUagGGCGGCUGcuGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 29989 0.67 0.697999
Target:  5'- cCGGCGucgaCCugguCGCUGGUGACGACGUCAg -3'
miRNA:   3'- -GCUGCua--GG----GCGGCUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 26112 0.67 0.697999
Target:  5'- gGACGuUCCCgGUCG-CGACGAUcgCGu -3'
miRNA:   3'- gCUGCuAGGG-CGGCuGCUGCUGuaGU- -5'
16408 5' -55.5 NC_004084.1 + 29487 0.67 0.697999
Target:  5'- uCGACGcgCUCcCCGAgGcCGACGUCGc -3'
miRNA:   3'- -GCUGCuaGGGcGGCUgCuGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 6689 0.67 0.696941
Target:  5'- uCGACGAcgUCCaucucgaggucaaCGCCGGCGAUGucCGUCc -3'
miRNA:   3'- -GCUGCU--AGG-------------GCGGCUGCUGCu-GUAGu -5'
16408 5' -55.5 NC_004084.1 + 9910 0.67 0.691645
Target:  5'- aGAuCGAaCCCGCCGAUgccgcuaaagagugaGACGuGCGUCGg -3'
miRNA:   3'- gCU-GCUaGGGCGGCUG---------------CUGC-UGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 7136 0.67 0.729395
Target:  5'- uCGACGGauaUCCU--CGACGACGACA-CAg -3'
miRNA:   3'- -GCUGCU---AGGGcgGCUGCUGCUGUaGU- -5'
16408 5' -55.5 NC_004084.1 + 24306 0.67 0.719008
Target:  5'- cCGACGAUCCCuaCCGuCGugGucucACAUUg -3'
miRNA:   3'- -GCUGCUAGGGc-GGCuGCugC----UGUAGu -5'
16408 5' -55.5 NC_004084.1 + 22233 0.67 0.723173
Target:  5'- cCGaACGcAUCUCGCCGAguuacucaacccggaCGuCGACGUCGa -3'
miRNA:   3'- -GC-UGC-UAGGGCGGCU---------------GCuGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 8157 0.67 0.729395
Target:  5'- uCGAgGAcCUCGCCGccaACGGCGACGa-- -3'
miRNA:   3'- -GCUgCUaGGGCGGC---UGCUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 41477 0.68 0.666053
Target:  5'- cCGACGucgcgacgCCCGCCGAUGcCGAaCcgCAc -3'
miRNA:   3'- -GCUGCua------GGGCGGCUGCuGCU-GuaGU- -5'
16408 5' -55.5 NC_004084.1 + 20864 0.68 0.666053
Target:  5'- aCGuCGA-CCgCGCCGGCGAUGGaAUCGa -3'
miRNA:   3'- -GCuGCUaGG-GCGGCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 16429 0.68 0.65533
Target:  5'- aGACGG---CGUCGAUGugGGCAUCGg -3'
miRNA:   3'- gCUGCUaggGCGGCUGCugCUGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.