Results 1 - 20 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 20490 | 1.08 | 0.001479 |
Target: 5'- gCGACGAUCCCGCCGACGACGACAUCAc -3' miRNA: 3'- -GCUGCUAGGGCGGCUGCUGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 52938 | 0.79 | 0.15122 |
Target: 5'- gCGACGAUCUgGCCGuCGGCGuCGUCGu -3' miRNA: 3'- -GCUGCUAGGgCGGCuGCUGCuGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 8250 | 0.78 | 0.172847 |
Target: 5'- aGACGAUCgaCGCCGcUGACGACAUCc -3' miRNA: 3'- gCUGCUAGg-GCGGCuGCUGCUGUAGu -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 631 | 0.77 | 0.20774 |
Target: 5'- uGGCGAUCUCGUCGuggagcuccuCGACGGCGUCGu -3' miRNA: 3'- gCUGCUAGGGCGGCu---------GCUGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 20721 | 0.76 | 0.248553 |
Target: 5'- uCGGgGAUCCCGuuGcugguguCGACGACGUCGa -3' miRNA: 3'- -GCUgCUAGGGCggCu------GCUGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 48965 | 0.76 | 0.248553 |
Target: 5'- -cACGAUgCCGCCGACuACGGCGUCc -3' miRNA: 3'- gcUGCUAgGGCGGCUGcUGCUGUAGu -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 1807 | 0.76 | 0.261374 |
Target: 5'- cCGGCGAaCUCGCCGAcCGGCGACGa-- -3' miRNA: 3'- -GCUGCUaGGGCGGCU-GCUGCUGUagu -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 38300 | 0.76 | 0.236256 |
Target: 5'- cCGACG-UUCCGUCGACGAgcgUGACGUCGa -3' miRNA: 3'- -GCUGCuAGGGCGGCUGCU---GCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 40972 | 0.75 | 0.295053 |
Target: 5'- uCGACGAUCCCGgacgaacCCGACGAguuccggaaCGAgAUCAa -3' miRNA: 3'- -GCUGCUAGGGC-------GGCUGCU---------GCUgUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 4298 | 0.75 | 0.288622 |
Target: 5'- aCGACG-UCCCGCCGGUGAUcgcgGGCGUCGu -3' miRNA: 3'- -GCUGCuAGGGCGGCUGCUG----CUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 41498 | 0.74 | 0.324979 |
Target: 5'- aGACGAUCgcggaugCCGCUGGCGACGuugcucacaGCGUCGa -3' miRNA: 3'- gCUGCUAG-------GGCGGCUGCUGC---------UGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 2899 | 0.74 | 0.339164 |
Target: 5'- gGAgGAUCCCaucaucaacgcgguGCCGACGAgGaACAUCAg -3' miRNA: 3'- gCUgCUAGGG--------------CGGCUGCUgC-UGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 57522 | 0.74 | 0.306017 |
Target: 5'- cCGACGAcgCCGacagcgauaccgauuCCGACGGCGACGUCGa -3' miRNA: 3'- -GCUGCUagGGC---------------GGCUGCUGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 8805 | 0.74 | 0.325755 |
Target: 5'- gCGACGAgaUCuCCGUCGACGGCGAacUCGc -3' miRNA: 3'- -GCUGCU--AG-GGCGGCUGCUGCUguAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 5467 | 0.74 | 0.333594 |
Target: 5'- gCGACGAUCacgacgaCGCCGACGGCcaGAuCGUCGc -3' miRNA: 3'- -GCUGCUAGg------GCGGCUGCUG--CU-GUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 14366 | 0.74 | 0.333594 |
Target: 5'- gCGAgGAUCaccaucuguaCGgCGGCGGCGACAUCAa -3' miRNA: 3'- -GCUgCUAGg---------GCgGCUGCUGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 14813 | 0.73 | 0.36632 |
Target: 5'- gGugGAUCCUGuCCGACGAagGGCAUgAg -3' miRNA: 3'- gCugCUAGGGC-GGCUGCUg-CUGUAgU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 21465 | 0.73 | 0.357935 |
Target: 5'- gGACGcugaacaguccGUaCCCGaCCGACGGCGAUAUCu -3' miRNA: 3'- gCUGC-----------UA-GGGC-GGCUGCUGCUGUAGu -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 39763 | 0.73 | 0.357935 |
Target: 5'- aGGCuGAUCCCGacgccgaagaCGGCGACGAgGUCGg -3' miRNA: 3'- gCUG-CUAGGGCg---------GCUGCUGCUgUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 41743 | 0.73 | 0.352969 |
Target: 5'- uGACGAUCgggacgaCGCCGGCGAcgaggaccucccggaCGACGUCGa -3' miRNA: 3'- gCUGCUAGg------GCGGCUGCU---------------GCUGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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