miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 14813 0.73 0.36632
Target:  5'- gGugGAUCCUGuCCGACGAagGGCAUgAg -3'
miRNA:   3'- gCugCUAGGGC-GGCUGCUg-CUGUAgU- -5'
16408 5' -55.5 NC_004084.1 + 21465 0.73 0.357935
Target:  5'- gGACGcugaacaguccGUaCCCGaCCGACGGCGAUAUCu -3'
miRNA:   3'- gCUGC-----------UA-GGGC-GGCUGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 3149 0.73 0.37484
Target:  5'- uGACGAUCuacacgCCGCCGACcguaGACGuCGUCGa -3'
miRNA:   3'- gCUGCUAG------GGCGGCUG----CUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 35341 0.73 0.37484
Target:  5'- cCGACG-UCCaccucgucgcguCGCCGGCGACGAUcgCGa -3'
miRNA:   3'- -GCUGCuAGG------------GCGGCUGCUGCUGuaGU- -5'
16408 5' -55.5 NC_004084.1 + 21710 0.73 0.383493
Target:  5'- uCGGCGA--CCGUCGACGagauccGCGACGUCAu -3'
miRNA:   3'- -GCUGCUagGGCGGCUGC------UGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 41743 0.73 0.352969
Target:  5'- uGACGAUCgggacgaCGCCGGCGAcgaggaccucccggaCGACGUCGa -3'
miRNA:   3'- gCUGCUAGg------GCGGCUGCU---------------GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 22526 0.73 0.349685
Target:  5'- aCGACGAucgccUCCgGCCGAaGACGACcgAUCAc -3'
miRNA:   3'- -GCUGCU-----AGGgCGGCUgCUGCUG--UAGU- -5'
16408 5' -55.5 NC_004084.1 + 39763 0.73 0.357935
Target:  5'- aGGCuGAUCCCGacgccgaagaCGGCGACGAgGUCGg -3'
miRNA:   3'- gCUG-CUAGGGCg---------GCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 9409 0.72 0.419402
Target:  5'- uCGACGcgCuuGCCGAUGACGAgCAc-- -3'
miRNA:   3'- -GCUGCuaGggCGGCUGCUGCU-GUagu -5'
16408 5' -55.5 NC_004084.1 + 19158 0.72 0.413886
Target:  5'- uCGACGAccaccaucuUCCCGCCGcCcuugccgaugucguaGACGACGUCu -3'
miRNA:   3'- -GCUGCU---------AGGGCGGCuG---------------CUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 3796 0.72 0.410234
Target:  5'- aCGACGAUUcgauacgugacgCCGCCGAUGACuGAC-UCGa -3'
miRNA:   3'- -GCUGCUAG------------GGCGGCUGCUG-CUGuAGU- -5'
16408 5' -55.5 NC_004084.1 + 23063 0.72 0.392277
Target:  5'- -cGCGAUCgUCGCCGGCGACgcgacgaggugGACGUCGg -3'
miRNA:   3'- gcUGCUAG-GGCGGCUGCUG-----------CUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 13468 0.72 0.409324
Target:  5'- gCGACGAacgccguUCUCGUCGACGaACGuCAUCGu -3'
miRNA:   3'- -GCUGCU-------AGGGCGGCUGC-UGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 8929 0.72 0.419402
Target:  5'- aGACGAUCCggaugaCGCCGACGACuccgagGACAg-- -3'
miRNA:   3'- gCUGCUAGG------GCGGCUGCUG------CUGUagu -5'
16408 5' -55.5 NC_004084.1 + 36424 0.72 0.401192
Target:  5'- uCGACGAUCgCCGCaGACcuguACGACAUCc -3'
miRNA:   3'- -GCUGCUAG-GGCGgCUGc---UGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 58020 0.72 0.438104
Target:  5'- uCGACGAcgUCUGCgacauCGGCGGCGACGUCc -3'
miRNA:   3'- -GCUGCUa-GGGCG-----GCUGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 53249 0.72 0.438104
Target:  5'- gGGCGGUCgUCGaCGGCGACGAgAUCGg -3'
miRNA:   3'- gCUGCUAG-GGCgGCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 44320 0.72 0.438104
Target:  5'- gGACacUgCCGCC-ACGACGACAUCGa -3'
miRNA:   3'- gCUGcuAgGGCGGcUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 39699 0.72 0.438104
Target:  5'- uCGAcCGAaCCCGCCaguGACGGCGACGa-- -3'
miRNA:   3'- -GCU-GCUaGGGCGG---CUGCUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 6722 0.72 0.425893
Target:  5'- uGGCGGUCCCuuugaugccgccgaGuCCGAUGACGGCGUa- -3'
miRNA:   3'- gCUGCUAGGG--------------C-GGCUGCUGCUGUAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.