miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 44320 0.72 0.438104
Target:  5'- gGACacUgCCGCC-ACGACGACAUCGa -3'
miRNA:   3'- gCUGcuAgGGCGGcUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 39699 0.72 0.438104
Target:  5'- uCGAcCGAaCCCGCCaguGACGGCGACGa-- -3'
miRNA:   3'- -GCU-GCUaGGGCGG---CUGCUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 1242 0.71 0.476887
Target:  5'- gGGCGAUCgCGCCcAUcuccucauccugGACGACAUCAu -3'
miRNA:   3'- gCUGCUAGgGCGGcUG------------CUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 2572 0.71 0.476887
Target:  5'- aGACG-UCCgCGUCGuuGACGGCAUCc -3'
miRNA:   3'- gCUGCuAGG-GCGGCugCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 32048 0.71 0.476887
Target:  5'- aCGACGAUCCCGaacgCGACucgcuguuCGACGUCc -3'
miRNA:   3'- -GCUGCUAGGGCg---GCUGcu------GCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 41270 0.71 0.470959
Target:  5'- cCGGCGAUCguccccaucagugaaCCGCCGACcucauCGACGUCc -3'
miRNA:   3'- -GCUGCUAG---------------GGCGGCUGcu---GCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 389 0.71 0.486848
Target:  5'- gGACG-UCgCCGCCGAUGucgcaGACGUCGu -3'
miRNA:   3'- gCUGCuAG-GGCGGCUGCug---CUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 4923 0.71 0.486848
Target:  5'- aCGACGAcuUCgCCGUCGACguacugGAUGACGUCc -3'
miRNA:   3'- -GCUGCU--AG-GGCGGCUG------CUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 21154 0.71 0.486848
Target:  5'- aCGACGucagauucGUUCU-CCGAUGACGACAUCGa -3'
miRNA:   3'- -GCUGC--------UAGGGcGGCUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 24176 0.71 0.447633
Target:  5'- cCGACGcUCCCGCacaccuACGACGACAgccguUCAg -3'
miRNA:   3'- -GCUGCuAGGGCGgc----UGCUGCUGU-----AGU- -5'
16408 5' -55.5 NC_004084.1 + 54110 0.7 0.548475
Target:  5'- uCGACGAcgCCCGCgaucacCGGCGG-GACGUCGu -3'
miRNA:   3'- -GCUGCUa-GGGCG------GCUGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 47607 0.7 0.53801
Target:  5'- uGuCGAUCUCGUCacCGAUGACAUCAg -3'
miRNA:   3'- gCuGCUAGGGCGGcuGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 52094 0.7 0.527615
Target:  5'- cCGACGuuaCCGCCGGgaUGuCGACGUCGg -3'
miRNA:   3'- -GCUGCuagGGCGGCU--GCuGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 53441 0.7 0.527615
Target:  5'- aGugGGUcCCCGCCGAucuccuCGugGGuCGUCGu -3'
miRNA:   3'- gCugCUA-GGGCGGCU------GCugCU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 18317 0.7 0.517295
Target:  5'- gGAcuCGAagCCGCUGGCGugGGCGUUg -3'
miRNA:   3'- gCU--GCUagGGCGGCUGCugCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 21221 0.7 0.53801
Target:  5'- gCGGCGAa---GCCGGUGACGACAUCGu -3'
miRNA:   3'- -GCUGCUagggCGGCUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 48094 0.7 0.53801
Target:  5'- aGACGAa-CCGCUGACcgucagugagGACGGCAUCu -3'
miRNA:   3'- gCUGCUagGGCGGCUG----------CUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 2283 0.7 0.53801
Target:  5'- gGGCuGGUCgaCGCCGACGAcacugcggcgcaCGACGUCGa -3'
miRNA:   3'- gCUG-CUAGg-GCGGCUGCU------------GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 22311 0.7 0.53801
Target:  5'- uGACGAUacgCCGCCGGacgaaGACGACGa-- -3'
miRNA:   3'- gCUGCUAg--GGCGGCUg----CUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 3816 0.7 0.507057
Target:  5'- gCGAccuCGAUCCagucuucgucgaCGCCGACGACGGC-UCc -3'
miRNA:   3'- -GCU---GCUAGG------------GCGGCUGCUGCUGuAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.