miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 22311 0.7 0.53801
Target:  5'- uGACGAUacgCCGCCGGacgaaGACGACGa-- -3'
miRNA:   3'- gCUGCUAg--GGCGGCUg----CUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 22731 0.7 0.527615
Target:  5'- cCGACGAagUCCGCCcagcgguACGAgGACAUCGa -3'
miRNA:   3'- -GCUGCUa-GGGCGGc------UGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 44802 0.7 0.527615
Target:  5'- aCGACGGUCCCGaccacCCGGucggUGACGGUAUCGa -3'
miRNA:   3'- -GCUGCUAGGGC-----GGCU----GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 16728 0.69 0.56323
Target:  5'- gGACGcgCUCGCCGGucugcaucgcggccuCGAUGACGUUg -3'
miRNA:   3'- gCUGCuaGGGCGGCU---------------GCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 52994 0.69 0.569586
Target:  5'- -cGCGAUCCauucuucaCCGAUGACGAgGUCAg -3'
miRNA:   3'- gcUGCUAGGgc------GGCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 23572 0.69 0.601598
Target:  5'- gCGAUGcGUCUCGU--ACGACGACGUCGu -3'
miRNA:   3'- -GCUGC-UAGGGCGgcUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 49340 0.69 0.601598
Target:  5'- uCGGCGAUCgUGUCGAgGugaucguCGACGUCGc -3'
miRNA:   3'- -GCUGCUAGgGCGGCUgCu------GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 42867 0.69 0.569586
Target:  5'- uCGAcCGA-CCCGUCGACGuCGucCAUCAu -3'
miRNA:   3'- -GCU-GCUaGGGCGGCUGCuGCu-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 55971 0.69 0.613404
Target:  5'- aCGGCGAcgcggaggggcugaUCGCCGAUGGCGAgCAUCGc -3'
miRNA:   3'- -GCUGCUag------------GGCGGCUGCUGCU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 12666 0.69 0.559003
Target:  5'- uGACG-UCCCaGagugggaCGACGACGACGUUg -3'
miRNA:   3'- gCUGCuAGGG-Cg------GCUGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 35901 0.69 0.61233
Target:  5'- gGACG-UCCCGCUGGagUGGCcGCGUCGa -3'
miRNA:   3'- gCUGCuAGGGCGGCU--GCUGcUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 42312 0.69 0.611256
Target:  5'- gCGACGAUCgcgacgaCCGUCGG-GACGAgAUCGa -3'
miRNA:   3'- -GCUGCUAG-------GGCGGCUgCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 7530 0.69 0.601598
Target:  5'- aGugGGUgCaGCCGAUccagGACGGCAUCGa -3'
miRNA:   3'- gCugCUAgGgCGGCUG----CUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 51526 0.69 0.590892
Target:  5'- aGACGGUCgCGaucCCGACGuaccuCGGCAUCc -3'
miRNA:   3'- gCUGCUAGgGC---GGCUGCu----GCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 15560 0.69 0.580218
Target:  5'- uCGACGggUCgGUCGAUGcgcuaGCGGCAUCAa -3'
miRNA:   3'- -GCUGCuaGGgCGGCUGC-----UGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 17388 0.69 0.580218
Target:  5'- uGAgGAUCUCGCCGGCaGA-GugAUCGa -3'
miRNA:   3'- gCUgCUAGGGCGGCUG-CUgCugUAGU- -5'
16408 5' -55.5 NC_004084.1 + 40565 0.69 0.569586
Target:  5'- -aGCGAUCgaUGCgGGCGACGAgGUCAc -3'
miRNA:   3'- gcUGCUAGg-GCGgCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 42715 0.69 0.566406
Target:  5'- aCGGCGAUCaCCGUCaccgaucgcgagcaGGCGAagGACAUCGg -3'
miRNA:   3'- -GCUGCUAG-GGCGG--------------CUGCUg-CUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 1847 0.69 0.559003
Target:  5'- uGugGcUCCUGCagcgCGACgGACGACGUCGc -3'
miRNA:   3'- gCugCuAGGGCG----GCUG-CUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 11832 0.69 0.559003
Target:  5'- aCGA-GGUCgaaUCGCCuGACGGCGAUAUCGa -3'
miRNA:   3'- -GCUgCUAG---GGCGG-CUGCUGCUGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.