miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 21757 0.68 0.65533
Target:  5'- gGACGGUUCCaCgGGgauCGGCGGCAUCGa -3'
miRNA:   3'- gCUGCUAGGGcGgCU---GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 40453 0.68 0.666053
Target:  5'- cCGACGAUUCCGCCGucauCGGuuguuucuuCgGACGUCc -3'
miRNA:   3'- -GCUGCUAGGGCGGCu---GCU---------G-CUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 22254 0.68 0.65533
Target:  5'- uGAaGAUCUCGCgGAauGCGGCGUCAc -3'
miRNA:   3'- gCUgCUAGGGCGgCUgcUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 10464 0.68 0.65533
Target:  5'- aGGCGAUCCaggacgGCCuGACGgACGGCcUCGa -3'
miRNA:   3'- gCUGCUAGGg-----CGG-CUGC-UGCUGuAGU- -5'
16408 5' -55.5 NC_004084.1 + 58199 0.68 0.623078
Target:  5'- aCGACGAcuccCCCGCCGAUGGCcguGCGg-- -3'
miRNA:   3'- -GCUGCUa---GGGCGGCUGCUGc--UGUagu -5'
16408 5' -55.5 NC_004084.1 + 48021 0.68 0.633833
Target:  5'- uCGACGA-CCUGgaCGACGAcgagcuCGACGUCGa -3'
miRNA:   3'- -GCUGCUaGGGCg-GCUGCU------GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 36943 0.68 0.644587
Target:  5'- aGGCGAUCgCCGCCcucGAgGGCGAgccgguuccuCGUCAc -3'
miRNA:   3'- gCUGCUAG-GGCGG---CUgCUGCU----------GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 26361 0.68 0.644587
Target:  5'- gGACGccgcaaccgaAUCCauCGCCGucuggucagacGCGACGGCAUCGa -3'
miRNA:   3'- gCUGC----------UAGG--GCGGC-----------UGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 47255 0.68 0.648886
Target:  5'- aCGACcggCUCGCCGGCGccuacuacgaggucgACGACGUCc -3'
miRNA:   3'- -GCUGcuaGGGCGGCUGC---------------UGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 16429 0.68 0.65533
Target:  5'- aGACGG---CGUCGAUGugGGCAUCGg -3'
miRNA:   3'- gCUGCUaggGCGGCUGCugCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 20864 0.68 0.666053
Target:  5'- aCGuCGA-CCgCGCCGGCGAUGGaAUCGa -3'
miRNA:   3'- -GCuGCUaGG-GCGGCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 41477 0.68 0.666053
Target:  5'- cCGACGucgcgacgCCCGCCGAUGcCGAaCcgCAc -3'
miRNA:   3'- -GCUGCua------GGGCGGCUGCuGCU-GuaGU- -5'
16408 5' -55.5 NC_004084.1 + 41630 0.68 0.666053
Target:  5'- gCGACGGUCCgGgacaUCGACGuCGAguUCAa -3'
miRNA:   3'- -GCUGCUAGGgC----GGCUGCuGCUguAGU- -5'
16408 5' -55.5 NC_004084.1 + 53484 0.68 0.666053
Target:  5'- gGACGucAUCCaguaCGUCGACGGCGAaGUCGu -3'
miRNA:   3'- gCUGC--UAGG----GCGGCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 49261 0.68 0.666053
Target:  5'- uCGACG-UCCaCGUcaCGGCGACGGCgaaGUCGa -3'
miRNA:   3'- -GCUGCuAGG-GCG--GCUGCUGCUG---UAGU- -5'
16408 5' -55.5 NC_004084.1 + 32407 0.68 0.623078
Target:  5'- gCGuuCGGUCCCGUCGACGAgcuCGcacuCGUCGc -3'
miRNA:   3'- -GCu-GCUAGGGCGGCUGCU---GCu---GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 23362 0.68 0.623078
Target:  5'- uGGCGAccgCCUGCCGGuaucaGGCGAuCAUCGa -3'
miRNA:   3'- gCUGCUa--GGGCGGCUg----CUGCU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 53080 0.68 0.644587
Target:  5'- uCGcCG--CCCGCuCGGCGACGugAUCu -3'
miRNA:   3'- -GCuGCuaGGGCG-GCUGCUGCugUAGu -5'
16408 5' -55.5 NC_004084.1 + 11843 0.68 0.623078
Target:  5'- aCGACGAUCgCCgcgaugccgauGCCGAgucCGACcagGGCAUCAg -3'
miRNA:   3'- -GCUGCUAG-GG-----------CGGCU---GCUG---CUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 6689 0.67 0.696941
Target:  5'- uCGACGAcgUCCaucucgaggucaaCGCCGGCGAUGucCGUCc -3'
miRNA:   3'- -GCUGCU--AGG-------------GCGGCUGCUGCu-GUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.