Results 61 - 80 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 48094 | 0.7 | 0.53801 |
Target: 5'- aGACGAa-CCGCUGACcgucagugagGACGGCAUCu -3' miRNA: 3'- gCUGCUagGGCGGCUG----------CUGCUGUAGu -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 21221 | 0.7 | 0.53801 |
Target: 5'- gCGGCGAa---GCCGGUGACGACAUCGu -3' miRNA: 3'- -GCUGCUagggCGGCUGCUGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 54110 | 0.7 | 0.548475 |
Target: 5'- uCGACGAcgCCCGCgaucacCGGCGG-GACGUCGu -3' miRNA: 3'- -GCUGCUa-GGGCG------GCUGCUgCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 1847 | 0.69 | 0.559003 |
Target: 5'- uGugGcUCCUGCagcgCGACgGACGACGUCGc -3' miRNA: 3'- gCugCuAGGGCG----GCUG-CUGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 11832 | 0.69 | 0.559003 |
Target: 5'- aCGA-GGUCgaaUCGCCuGACGGCGAUAUCGa -3' miRNA: 3'- -GCUgCUAG---GGCGG-CUGCUGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 12666 | 0.69 | 0.559003 |
Target: 5'- uGACG-UCCCaGagugggaCGACGACGACGUUg -3' miRNA: 3'- gCUGCuAGGG-Cg------GCUGCUGCUGUAGu -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 16728 | 0.69 | 0.56323 |
Target: 5'- gGACGcgCUCGCCGGucugcaucgcggccuCGAUGACGUUg -3' miRNA: 3'- gCUGCuaGGGCGGCU---------------GCUGCUGUAGu -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 42715 | 0.69 | 0.566406 |
Target: 5'- aCGGCGAUCaCCGUCaccgaucgcgagcaGGCGAagGACAUCGg -3' miRNA: 3'- -GCUGCUAG-GGCGG--------------CUGCUg-CUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 40565 | 0.69 | 0.569586 |
Target: 5'- -aGCGAUCgaUGCgGGCGACGAgGUCAc -3' miRNA: 3'- gcUGCUAGg-GCGgCUGCUGCUgUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 52994 | 0.69 | 0.569586 |
Target: 5'- -cGCGAUCCauucuucaCCGAUGACGAgGUCAg -3' miRNA: 3'- gcUGCUAGGgc------GGCUGCUGCUgUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 42867 | 0.69 | 0.569586 |
Target: 5'- uCGAcCGA-CCCGUCGACGuCGucCAUCAu -3' miRNA: 3'- -GCU-GCUaGGGCGGCUGCuGCu-GUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 17388 | 0.69 | 0.580218 |
Target: 5'- uGAgGAUCUCGCCGGCaGA-GugAUCGa -3' miRNA: 3'- gCUgCUAGGGCGGCUG-CUgCugUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 15560 | 0.69 | 0.580218 |
Target: 5'- uCGACGggUCgGUCGAUGcgcuaGCGGCAUCAa -3' miRNA: 3'- -GCUGCuaGGgCGGCUGC-----UGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 51526 | 0.69 | 0.590892 |
Target: 5'- aGACGGUCgCGaucCCGACGuaccuCGGCAUCc -3' miRNA: 3'- gCUGCUAGgGC---GGCUGCu----GCUGUAGu -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 49340 | 0.69 | 0.601598 |
Target: 5'- uCGGCGAUCgUGUCGAgGugaucguCGACGUCGc -3' miRNA: 3'- -GCUGCUAGgGCGGCUgCu------GCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 23572 | 0.69 | 0.601598 |
Target: 5'- gCGAUGcGUCUCGU--ACGACGACGUCGu -3' miRNA: 3'- -GCUGC-UAGGGCGgcUGCUGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 7530 | 0.69 | 0.601598 |
Target: 5'- aGugGGUgCaGCCGAUccagGACGGCAUCGa -3' miRNA: 3'- gCugCUAgGgCGGCUG----CUGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 42312 | 0.69 | 0.611256 |
Target: 5'- gCGACGAUCgcgacgaCCGUCGG-GACGAgAUCGa -3' miRNA: 3'- -GCUGCUAG-------GGCGGCUgCUGCUgUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 35901 | 0.69 | 0.61233 |
Target: 5'- gGACG-UCCCGCUGGagUGGCcGCGUCGa -3' miRNA: 3'- gCUGCuAGGGCGGCU--GCUGcUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 55971 | 0.69 | 0.613404 |
Target: 5'- aCGGCGAcgcggaggggcugaUCGCCGAUGGCGAgCAUCGc -3' miRNA: 3'- -GCUGCUag------------GGCGGCUGCUGCU-GUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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