Results 81 - 100 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 23362 | 0.68 | 0.623078 |
Target: 5'- uGGCGAccgCCUGCCGGuaucaGGCGAuCAUCGa -3' miRNA: 3'- gCUGCUa--GGGCGGCUg----CUGCU-GUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 32407 | 0.68 | 0.623078 |
Target: 5'- gCGuuCGGUCCCGUCGACGAgcuCGcacuCGUCGc -3' miRNA: 3'- -GCu-GCUAGGGCGGCUGCU---GCu---GUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 58199 | 0.68 | 0.623078 |
Target: 5'- aCGACGAcuccCCCGCCGAUGGCcguGCGg-- -3' miRNA: 3'- -GCUGCUa---GGGCGGCUGCUGc--UGUagu -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 11843 | 0.68 | 0.623078 |
Target: 5'- aCGACGAUCgCCgcgaugccgauGCCGAgucCGACcagGGCAUCAg -3' miRNA: 3'- -GCUGCUAG-GG-----------CGGCU---GCUG---CUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 48021 | 0.68 | 0.633833 |
Target: 5'- uCGACGA-CCUGgaCGACGAcgagcuCGACGUCGa -3' miRNA: 3'- -GCUGCUaGGGCg-GCUGCU------GCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 26361 | 0.68 | 0.644587 |
Target: 5'- gGACGccgcaaccgaAUCCauCGCCGucuggucagacGCGACGGCAUCGa -3' miRNA: 3'- gCUGC----------UAGG--GCGGC-----------UGCUGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 36943 | 0.68 | 0.644587 |
Target: 5'- aGGCGAUCgCCGCCcucGAgGGCGAgccgguuccuCGUCAc -3' miRNA: 3'- gCUGCUAG-GGCGG---CUgCUGCU----------GUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 53080 | 0.68 | 0.644587 |
Target: 5'- uCGcCG--CCCGCuCGGCGACGugAUCu -3' miRNA: 3'- -GCuGCuaGGGCG-GCUGCUGCugUAGu -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 47255 | 0.68 | 0.648886 |
Target: 5'- aCGACcggCUCGCCGGCGccuacuacgaggucgACGACGUCc -3' miRNA: 3'- -GCUGcuaGGGCGGCUGC---------------UGCUGUAGu -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 22254 | 0.68 | 0.65533 |
Target: 5'- uGAaGAUCUCGCgGAauGCGGCGUCAc -3' miRNA: 3'- gCUgCUAGGGCGgCUgcUGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 16429 | 0.68 | 0.65533 |
Target: 5'- aGACGG---CGUCGAUGugGGCAUCGg -3' miRNA: 3'- gCUGCUaggGCGGCUGCugCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 10464 | 0.68 | 0.65533 |
Target: 5'- aGGCGAUCCaggacgGCCuGACGgACGGCcUCGa -3' miRNA: 3'- gCUGCUAGGg-----CGG-CUGC-UGCUGuAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 21757 | 0.68 | 0.65533 |
Target: 5'- gGACGGUUCCaCgGGgauCGGCGGCAUCGa -3' miRNA: 3'- gCUGCUAGGGcGgCU---GCUGCUGUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 40453 | 0.68 | 0.666053 |
Target: 5'- cCGACGAUUCCGCCGucauCGGuuguuucuuCgGACGUCc -3' miRNA: 3'- -GCUGCUAGGGCGGCu---GCU---------G-CUGUAGu -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 20864 | 0.68 | 0.666053 |
Target: 5'- aCGuCGA-CCgCGCCGGCGAUGGaAUCGa -3' miRNA: 3'- -GCuGCUaGG-GCGGCUGCUGCUgUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 41477 | 0.68 | 0.666053 |
Target: 5'- cCGACGucgcgacgCCCGCCGAUGcCGAaCcgCAc -3' miRNA: 3'- -GCUGCua------GGGCGGCUGCuGCU-GuaGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 41630 | 0.68 | 0.666053 |
Target: 5'- gCGACGGUCCgGgacaUCGACGuCGAguUCAa -3' miRNA: 3'- -GCUGCUAGGgC----GGCUGCuGCUguAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 49261 | 0.68 | 0.666053 |
Target: 5'- uCGACG-UCCaCGUcaCGGCGACGGCgaaGUCGa -3' miRNA: 3'- -GCUGCuAGG-GCG--GCUGCUGCUG---UAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 53484 | 0.68 | 0.666053 |
Target: 5'- gGACGucAUCCaguaCGUCGACGGCGAaGUCGu -3' miRNA: 3'- gCUGC--UAGG----GCGGCUGCUGCUgUAGU- -5' |
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16408 | 5' | -55.5 | NC_004084.1 | + | 30448 | 0.67 | 0.676745 |
Target: 5'- gGACGAcgUCCCGCUGGgGACGu--UCc -3' miRNA: 3'- gCUGCU--AGGGCGGCUgCUGCuguAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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