miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 35215 0.67 0.707488
Target:  5'- uCGG-GAUCgaGCCGACGAucgcgauCGACGUCGa -3'
miRNA:   3'- -GCUgCUAGggCGGCUGCU-------GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 53113 0.67 0.697999
Target:  5'- uCGACGGagCCGCCGA-GugGAUggCGg -3'
miRNA:   3'- -GCUGCUagGGCGGCUgCugCUGuaGU- -5'
16408 5' -55.5 NC_004084.1 + 295 0.67 0.697999
Target:  5'- uCGACGAcgaCCGCCGACGAgaaccCGAag-CAg -3'
miRNA:   3'- -GCUGCUag-GGCGGCUGCU-----GCUguaGU- -5'
16408 5' -55.5 NC_004084.1 + 29989 0.67 0.697999
Target:  5'- cCGGCGucgaCCugguCGCUGGUGACGACGUCAg -3'
miRNA:   3'- -GCUGCua--GG----GCGGCUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 26112 0.67 0.697999
Target:  5'- gGACGuUCCCgGUCG-CGACGAUcgCGu -3'
miRNA:   3'- gCUGCuAGGG-CGGCuGCUGCUGuaGU- -5'
16408 5' -55.5 NC_004084.1 + 29487 0.67 0.697999
Target:  5'- uCGACGcgCUCcCCGAgGcCGACGUCGc -3'
miRNA:   3'- -GCUGCuaGGGcGGCUgCuGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 6689 0.67 0.696941
Target:  5'- uCGACGAcgUCCaucucgaggucaaCGCCGGCGAUGucCGUCc -3'
miRNA:   3'- -GCUGCU--AGG-------------GCGGCUGCUGCu-GUAGu -5'
16408 5' -55.5 NC_004084.1 + 9910 0.67 0.691645
Target:  5'- aGAuCGAaCCCGCCGAUgccgcuaaagagugaGACGuGCGUCGg -3'
miRNA:   3'- gCU-GCUaGGGCGGCUG---------------CUGC-UGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 47393 0.67 0.687397
Target:  5'- aCGGCGAgcUCCaggGCgCGACGACGAagccgaaggaCGUCGg -3'
miRNA:   3'- -GCUGCU--AGGg--CG-GCUGCUGCU----------GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 7444 0.67 0.687397
Target:  5'- uGGCGAgacCUCGgaguCCGACGGCGAC-UCGa -3'
miRNA:   3'- gCUGCUa--GGGC----GGCUGCUGCUGuAGU- -5'
16408 5' -55.5 NC_004084.1 + 3960 0.67 0.687397
Target:  5'- aGACGAUCCgCGgCGACaguGCGGCG-CAg -3'
miRNA:   3'- gCUGCUAGG-GCgGCUGc--UGCUGUaGU- -5'
16408 5' -55.5 NC_004084.1 + 566 0.67 0.681012
Target:  5'- aGGCGGggaucuUCCCgGCCGAgGAacucgagaugacggcCGACGUCAa -3'
miRNA:   3'- gCUGCU------AGGG-CGGCUgCU---------------GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 17159 0.67 0.676745
Target:  5'- gGACGAUCgCCGgCGACGuCGAaggCGa -3'
miRNA:   3'- gCUGCUAG-GGCgGCUGCuGCUguaGU- -5'
16408 5' -55.5 NC_004084.1 + 12997 0.67 0.676745
Target:  5'- cCGAC-AUCCgGCuCGAuCGACGACcUCGa -3'
miRNA:   3'- -GCUGcUAGGgCG-GCU-GCUGCUGuAGU- -5'
16408 5' -55.5 NC_004084.1 + 30448 0.67 0.676745
Target:  5'- gGACGAcgUCCCGCUGGgGACGu--UCc -3'
miRNA:   3'- gCUGCU--AGGGCGGCUgCUGCuguAGu -5'
16408 5' -55.5 NC_004084.1 + 44259 0.67 0.676745
Target:  5'- gGACGA-CCgGCCuucacGACGACGGCGa-- -3'
miRNA:   3'- gCUGCUaGGgCGG-----CUGCUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 55563 0.67 0.676745
Target:  5'- gCGACGAaCUCGUCGGCcuguuCGGCAUCc -3'
miRNA:   3'- -GCUGCUaGGGCGGCUGcu---GCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 41477 0.68 0.666053
Target:  5'- cCGACGucgcgacgCCCGCCGAUGcCGAaCcgCAc -3'
miRNA:   3'- -GCUGCua------GGGCGGCUGCuGCU-GuaGU- -5'
16408 5' -55.5 NC_004084.1 + 49261 0.68 0.666053
Target:  5'- uCGACG-UCCaCGUcaCGGCGACGGCgaaGUCGa -3'
miRNA:   3'- -GCUGCuAGG-GCG--GCUGCUGCUG---UAGU- -5'
16408 5' -55.5 NC_004084.1 + 20864 0.68 0.666053
Target:  5'- aCGuCGA-CCgCGCCGGCGAUGGaAUCGa -3'
miRNA:   3'- -GCuGCUaGG-GCGGCUGCUGCUgUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.