miRNA display CGI


Results 21 - 40 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 4298 0.75 0.288622
Target:  5'- aCGACG-UCCCGCCGGUGAUcgcgGGCGUCGu -3'
miRNA:   3'- -GCUGCuAGGGCGGCUGCUG----CUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 4451 0.66 0.769906
Target:  5'- uCGACGcgCCCGaCUGgACGAuCGAguUCGa -3'
miRNA:   3'- -GCUGCuaGGGC-GGC-UGCU-GCUguAGU- -5'
16408 5' -55.5 NC_004084.1 + 4923 0.71 0.486848
Target:  5'- aCGACGAcuUCgCCGUCGACguacugGAUGACGUCc -3'
miRNA:   3'- -GCUGCU--AG-GGCGGCUG------CUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 5160 0.66 0.769906
Target:  5'- cCGGCccGAUCUcguCGCCGuCGACGACcgCc -3'
miRNA:   3'- -GCUG--CUAGG---GCGGCuGCUGCUGuaGu -5'
16408 5' -55.5 NC_004084.1 + 5467 0.74 0.333594
Target:  5'- gCGACGAUCacgacgaCGCCGACGGCcaGAuCGUCGc -3'
miRNA:   3'- -GCUGCUAGg------GCGGCUGCUG--CU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 5747 0.66 0.739689
Target:  5'- gGAUGAUCgCC-UCGACGACGAUcUCc -3'
miRNA:   3'- gCUGCUAG-GGcGGCUGCUGCUGuAGu -5'
16408 5' -55.5 NC_004084.1 + 6689 0.67 0.696941
Target:  5'- uCGACGAcgUCCaucucgaggucaaCGCCGGCGAUGucCGUCc -3'
miRNA:   3'- -GCUGCU--AGG-------------GCGGCUGCUGCu-GUAGu -5'
16408 5' -55.5 NC_004084.1 + 6722 0.72 0.425893
Target:  5'- uGGCGGUCCCuuugaugccgccgaGuCCGAUGACGGCGUa- -3'
miRNA:   3'- gCUGCUAGGG--------------C-GGCUGCUGCUGUAgu -5'
16408 5' -55.5 NC_004084.1 + 7136 0.67 0.729395
Target:  5'- uCGACGGauaUCCU--CGACGACGACA-CAg -3'
miRNA:   3'- -GCUGCU---AGGGcgGCUGCUGCUGUaGU- -5'
16408 5' -55.5 NC_004084.1 + 7444 0.67 0.687397
Target:  5'- uGGCGAgacCUCGgaguCCGACGGCGAC-UCGa -3'
miRNA:   3'- gCUGCUa--GGGC----GGCUGCUGCUGuAGU- -5'
16408 5' -55.5 NC_004084.1 + 7530 0.69 0.601598
Target:  5'- aGugGGUgCaGCCGAUccagGACGGCAUCGa -3'
miRNA:   3'- gCugCUAgGgCGGCUG----CUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 7654 0.66 0.739689
Target:  5'- uGACGAagagCCgGaCGACGGCGAaGUCAa -3'
miRNA:   3'- gCUGCUa---GGgCgGCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 8157 0.67 0.729395
Target:  5'- uCGAgGAcCUCGCCGccaACGGCGACGa-- -3'
miRNA:   3'- -GCUgCUaGGGCGGC---UGCUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 8250 0.78 0.172847
Target:  5'- aGACGAUCgaCGCCGcUGACGACAUCc -3'
miRNA:   3'- gCUGCUAGg-GCGGCuGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 8297 0.66 0.769906
Target:  5'- uCGGC-AUCCCGuuGGgcuucguccaGACGGCGUCGg -3'
miRNA:   3'- -GCUGcUAGGGCggCUg---------CUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 8336 0.66 0.759955
Target:  5'- gGAUGAUCCaGCCGGCGuuuuCGAgAgCAa -3'
miRNA:   3'- gCUGCUAGGgCGGCUGCu---GCUgUaGU- -5'
16408 5' -55.5 NC_004084.1 + 8805 0.74 0.325755
Target:  5'- gCGACGAgaUCuCCGUCGACGGCGAacUCGc -3'
miRNA:   3'- -GCUGCU--AG-GGCGGCUGCUGCUguAGU- -5'
16408 5' -55.5 NC_004084.1 + 8929 0.72 0.419402
Target:  5'- aGACGAUCCggaugaCGCCGACGACuccgagGACAg-- -3'
miRNA:   3'- gCUGCUAGG------GCGGCUGCUG------CUGUagu -5'
16408 5' -55.5 NC_004084.1 + 9029 0.67 0.72836
Target:  5'- aCGACGAcuacgaaUCCCGCauCGAgCGgguagagucggGCGACGUCGa -3'
miRNA:   3'- -GCUGCU-------AGGGCG--GCU-GC-----------UGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 9409 0.72 0.419402
Target:  5'- uCGACGcgCuuGCCGAUGACGAgCAc-- -3'
miRNA:   3'- -GCUGCuaGggCGGCUGCUGCU-GUagu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.