miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 17159 0.67 0.676745
Target:  5'- gGACGAUCgCCGgCGACGuCGAaggCGa -3'
miRNA:   3'- gCUGCUAG-GGCgGCUGCuGCUguaGU- -5'
16408 5' -55.5 NC_004084.1 + 17388 0.69 0.580218
Target:  5'- uGAgGAUCUCGCCGGCaGA-GugAUCGa -3'
miRNA:   3'- gCUgCUAGGGCGGCUG-CUgCugUAGU- -5'
16408 5' -55.5 NC_004084.1 + 17510 0.66 0.773849
Target:  5'- uGACGGcaUCCCGUCGuCGGauaucgauguugaaGGCGUCAc -3'
miRNA:   3'- gCUGCU--AGGGCGGCuGCUg-------------CUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 18317 0.7 0.517295
Target:  5'- gGAcuCGAagCCGCUGGCGugGGCGUUg -3'
miRNA:   3'- gCU--GCUagGGCGGCUGCugCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 18694 0.66 0.749879
Target:  5'- uCGuC-AUCCuCGUCGACGGCGuCGUCGc -3'
miRNA:   3'- -GCuGcUAGG-GCGGCUGCUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 18984 0.67 0.719008
Target:  5'- cCGGCGGggaagucguaggUCCCGCUGGCGGgGugGg-- -3'
miRNA:   3'- -GCUGCU------------AGGGCGGCUGCUgCugUagu -5'
16408 5' -55.5 NC_004084.1 + 19158 0.72 0.413886
Target:  5'- uCGACGAccaccaucuUCCCGCCGcCcuugccgaugucguaGACGACGUCu -3'
miRNA:   3'- -GCUGCU---------AGGGCGGCuG---------------CUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 19539 0.66 0.748865
Target:  5'- aGACGcugucuucuUCCCGCaacucuggcucgaCGAgGACGACGUCc -3'
miRNA:   3'- gCUGCu--------AGGGCG-------------GCUgCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 19630 0.67 0.719008
Target:  5'- -aGCGAguUCCgGCuCGACGACGAUggCGu -3'
miRNA:   3'- gcUGCU--AGGgCG-GCUGCUGCUGuaGU- -5'
16408 5' -55.5 NC_004084.1 + 20097 0.67 0.729395
Target:  5'- aGACGA--CCGUCGAUauCGACGUCAc -3'
miRNA:   3'- gCUGCUagGGCGGCUGcuGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 20490 1.08 0.001479
Target:  5'- gCGACGAUCCCGCCGACGACGACAUCAc -3'
miRNA:   3'- -GCUGCUAGGGCGGCUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 20721 0.76 0.248553
Target:  5'- uCGGgGAUCCCGuuGcugguguCGACGACGUCGa -3'
miRNA:   3'- -GCUgCUAGGGCggCu------GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 20864 0.68 0.666053
Target:  5'- aCGuCGA-CCgCGCCGGCGAUGGaAUCGa -3'
miRNA:   3'- -GCuGCUaGG-GCGGCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21154 0.71 0.486848
Target:  5'- aCGACGucagauucGUUCU-CCGAUGACGACAUCGa -3'
miRNA:   3'- -GCUGC--------UAGGGcGGCUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21221 0.7 0.53801
Target:  5'- gCGGCGAa---GCCGGUGACGACAUCGu -3'
miRNA:   3'- -GCUGCUagggCGGCUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21222 0.67 0.729395
Target:  5'- aGGCGGuacuUCCCGUCGucggucuucuCGAUGAUGUCGa -3'
miRNA:   3'- gCUGCU----AGGGCGGCu---------GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21281 0.66 0.776791
Target:  5'- aCGACcaGAUCuuCCGCCGcgugauggaaaccaGCGGCGuCAUCGa -3'
miRNA:   3'- -GCUG--CUAG--GGCGGC--------------UGCUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21465 0.73 0.357935
Target:  5'- gGACGcugaacaguccGUaCCCGaCCGACGGCGAUAUCu -3'
miRNA:   3'- gCUGC-----------UA-GGGC-GGCUGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 21710 0.73 0.383493
Target:  5'- uCGGCGA--CCGUCGACGagauccGCGACGUCAu -3'
miRNA:   3'- -GCUGCUagGGCGGCUGC------UGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21754 0.66 0.769906
Target:  5'- gGAcauCGAUgCUGCCGAUGuCGAgAUCGa -3'
miRNA:   3'- gCU---GCUAgGGCGGCUGCuGCUgUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.