miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 21757 0.68 0.65533
Target:  5'- gGACGGUUCCaCgGGgauCGGCGGCAUCGa -3'
miRNA:   3'- gCUGCUAGGGcGgCU---GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21957 0.66 0.780695
Target:  5'- gGACGAcgUCuCCGCCGAgaucgacacggugcaGACGGCGUa- -3'
miRNA:   3'- gCUGCU--AG-GGCGGCUg--------------CUGCUGUAgu -5'
16408 5' -55.5 NC_004084.1 + 22233 0.67 0.723173
Target:  5'- cCGaACGcAUCUCGCCGAguuacucaacccggaCGuCGACGUCGa -3'
miRNA:   3'- -GC-UGC-UAGGGCGGCU---------------GCuGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 22254 0.68 0.65533
Target:  5'- uGAaGAUCUCGCgGAauGCGGCGUCAc -3'
miRNA:   3'- gCUgCUAGGGCGgCUgcUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 22311 0.7 0.53801
Target:  5'- uGACGAUacgCCGCCGGacgaaGACGACGa-- -3'
miRNA:   3'- gCUGCUAg--GGCGGCUg----CUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 22526 0.73 0.349685
Target:  5'- aCGACGAucgccUCCgGCCGAaGACGACcgAUCAc -3'
miRNA:   3'- -GCUGCU-----AGGgCGGCUgCUGCUG--UAGU- -5'
16408 5' -55.5 NC_004084.1 + 22731 0.7 0.527615
Target:  5'- cCGACGAagUCCGCCcagcgguACGAgGACAUCGa -3'
miRNA:   3'- -GCUGCUa-GGGCGGc------UGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 23063 0.72 0.392277
Target:  5'- -cGCGAUCgUCGCCGGCGACgcgacgaggugGACGUCGg -3'
miRNA:   3'- gcUGCUAG-GGCGGCUGCUG-----------CUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 23362 0.68 0.623078
Target:  5'- uGGCGAccgCCUGCCGGuaucaGGCGAuCAUCGa -3'
miRNA:   3'- gCUGCUa--GGGCGGCUg----CUGCU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 23572 0.69 0.601598
Target:  5'- gCGAUGcGUCUCGU--ACGACGACGUCGu -3'
miRNA:   3'- -GCUGC-UAGGGCGgcUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 24176 0.71 0.447633
Target:  5'- cCGACGcUCCCGCacaccuACGACGACAgccguUCAg -3'
miRNA:   3'- -GCUGCuAGGGCGgc----UGCUGCUGU-----AGU- -5'
16408 5' -55.5 NC_004084.1 + 24306 0.67 0.719008
Target:  5'- cCGACGAUCCCuaCCGuCGugGucucACAUUg -3'
miRNA:   3'- -GCUGCUAGGGc-GGCuGCugC----UGUAGu -5'
16408 5' -55.5 NC_004084.1 + 26112 0.67 0.697999
Target:  5'- gGACGuUCCCgGUCG-CGACGAUcgCGu -3'
miRNA:   3'- gCUGCuAGGG-CGGCuGCUGCUGuaGU- -5'
16408 5' -55.5 NC_004084.1 + 26361 0.68 0.644587
Target:  5'- gGACGccgcaaccgaAUCCauCGCCGucuggucagacGCGACGGCAUCGa -3'
miRNA:   3'- gCUGC----------UAGG--GCGGC-----------UGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 27291 0.66 0.773849
Target:  5'- uGACGAUCgcggCGCCGcuguucaucauccugGCGACGuACGUCc -3'
miRNA:   3'- gCUGCUAGg---GCGGC---------------UGCUGC-UGUAGu -5'
16408 5' -55.5 NC_004084.1 + 28429 0.66 0.763951
Target:  5'- aGACGAUccucaaCCgguucuacaaggacaCGCgCGACGAgGACAUCAc -3'
miRNA:   3'- gCUGCUA------GG---------------GCG-GCUGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 28803 0.66 0.749879
Target:  5'- cCGACagccaGGUgCCGuuGugGGCGAgCAUCGc -3'
miRNA:   3'- -GCUG-----CUAgGGCggCugCUGCU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 28989 0.66 0.769906
Target:  5'- gCGGUGAagCUCGCCGuCGACGGCAa-- -3'
miRNA:   3'- -GCUGCUa-GGGCGGCuGCUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 29011 0.66 0.769906
Target:  5'- gCGAUGcaggagCCCaUCGAgGGCGGCAUCAc -3'
miRNA:   3'- -GCUGCua----GGGcGGCUgCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 29068 0.66 0.769906
Target:  5'- gCGACcg-CCCGCuCGGgGGCGuCGUCGc -3'
miRNA:   3'- -GCUGcuaGGGCG-GCUgCUGCuGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.