miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 58199 0.68 0.623078
Target:  5'- aCGACGAcuccCCCGCCGAUGGCcguGCGg-- -3'
miRNA:   3'- -GCUGCUa---GGGCGGCUGCUGc--UGUagu -5'
16408 5' -55.5 NC_004084.1 + 58046 0.66 0.778746
Target:  5'- uCGAUGAaguucUCCCgguaggcGCCGuguuCGACGGCGUUg -3'
miRNA:   3'- -GCUGCU-----AGGG-------CGGCu---GCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 58020 0.72 0.438104
Target:  5'- uCGACGAcgUCUGCgacauCGGCGGCGACGUCc -3'
miRNA:   3'- -GCUGCUa-GGGCG-----GCUGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 57522 0.74 0.306017
Target:  5'- cCGACGAcgCCGacagcgauaccgauuCCGACGGCGACGUCGa -3'
miRNA:   3'- -GCUGCUagGGC---------------GGCUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 56604 0.66 0.749879
Target:  5'- gCGGCG-UCgUCGCCGGuCGGCGAguUCGc -3'
miRNA:   3'- -GCUGCuAG-GGCGGCU-GCUGCUguAGU- -5'
16408 5' -55.5 NC_004084.1 + 56181 0.66 0.753924
Target:  5'- cCGAggaGAUCuCCGCgcuggccgaagcgagCGGCGAgGACAUCGa -3'
miRNA:   3'- -GCUg--CUAG-GGCG---------------GCUGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 55971 0.69 0.613404
Target:  5'- aCGGCGAcgcggaggggcugaUCGCCGAUGGCGAgCAUCGc -3'
miRNA:   3'- -GCUGCUag------------GGCGGCUGCUGCU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 55903 0.66 0.769906
Target:  5'- aCGACGAU-CCGCCGGaggaGugGGCc--- -3'
miRNA:   3'- -GCUGCUAgGGCGGCUg---CugCUGuagu -5'
16408 5' -55.5 NC_004084.1 + 55563 0.67 0.676745
Target:  5'- gCGACGAaCUCGUCGGCcuguuCGGCAUCc -3'
miRNA:   3'- -GCUGCUaGGGCGGCUGcu---GCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 55349 0.73 0.352969
Target:  5'- uCGACGAgcggCCCGUCGACGaguuccucgagggugGCGAuCAUCGc -3'
miRNA:   3'- -GCUGCUa---GGGCGGCUGC---------------UGCU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 55243 0.73 0.36632
Target:  5'- -cACG-UCCuCGCCGuCGACGACGUCu -3'
miRNA:   3'- gcUGCuAGG-GCGGCuGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 54246 0.67 0.708539
Target:  5'- -aGCGAUCagCGCCGuCGGCGAgGUUg -3'
miRNA:   3'- gcUGCUAGg-GCGGCuGCUGCUgUAGu -5'
16408 5' -55.5 NC_004084.1 + 54110 0.7 0.548475
Target:  5'- uCGACGAcgCCCGCgaucacCGGCGG-GACGUCGu -3'
miRNA:   3'- -GCUGCUa-GGGCG------GCUGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 53484 0.68 0.666053
Target:  5'- gGACGucAUCCaguaCGUCGACGGCGAaGUCGu -3'
miRNA:   3'- gCUGC--UAGG----GCGGCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 53441 0.7 0.527615
Target:  5'- aGugGGUcCCCGCCGAucuccuCGugGGuCGUCGu -3'
miRNA:   3'- gCugCUA-GGGCGGCU------GCugCU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 53249 0.72 0.438104
Target:  5'- gGGCGGUCgUCGaCGGCGACGAgAUCGg -3'
miRNA:   3'- gCUGCUAG-GGCgGCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 53113 0.67 0.697999
Target:  5'- uCGACGGagCCGCCGA-GugGAUggCGg -3'
miRNA:   3'- -GCUGCUagGGCGGCUgCugCUGuaGU- -5'
16408 5' -55.5 NC_004084.1 + 53080 0.68 0.644587
Target:  5'- uCGcCG--CCCGCuCGGCGACGugAUCu -3'
miRNA:   3'- -GCuGCuaGGGCG-GCUGCUGCugUAGu -5'
16408 5' -55.5 NC_004084.1 + 52994 0.69 0.569586
Target:  5'- -cGCGAUCCauucuucaCCGAUGACGAgGUCAg -3'
miRNA:   3'- gcUGCUAGGgc------GGCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 52938 0.79 0.15122
Target:  5'- gCGACGAUCUgGCCGuCGGCGuCGUCGu -3'
miRNA:   3'- -GCUGCUAGGgCGGCuGCUGCuGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.