miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 36943 0.68 0.644587
Target:  5'- aGGCGAUCgCCGCCcucGAgGGCGAgccgguuccuCGUCAc -3'
miRNA:   3'- gCUGCUAG-GGCGG---CUgCUGCU----------GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 36702 0.72 0.419402
Target:  5'- uGACgucgcgGAUCUCGUCGACGGucgcCGACGUCAg -3'
miRNA:   3'- gCUG------CUAGGGCGGCUGCU----GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 36424 0.72 0.401192
Target:  5'- uCGACGAUCgCCGCaGACcuguACGACAUCc -3'
miRNA:   3'- -GCUGCUAG-GGCGgCUGc---UGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 35904 0.7 0.517295
Target:  5'- aGGCGAUCgUCGUCGAgGAUGACGcguUCAc -3'
miRNA:   3'- gCUGCUAG-GGCGGCUgCUGCUGU---AGU- -5'
16408 5' -55.5 NC_004084.1 + 35901 0.69 0.61233
Target:  5'- gGACG-UCCCGCUGGagUGGCcGCGUCGa -3'
miRNA:   3'- gCUGCuAGGGCGGCU--GCUGcUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 35341 0.73 0.37484
Target:  5'- cCGACG-UCCaccucgucgcguCGCCGGCGACGAUcgCGa -3'
miRNA:   3'- -GCUGCuAGG------------GCGGCUGCUGCUGuaGU- -5'
16408 5' -55.5 NC_004084.1 + 35215 0.67 0.707488
Target:  5'- uCGG-GAUCgaGCCGACGAucgcgauCGACGUCGa -3'
miRNA:   3'- -GCUgCUAGggCGGCUGCU-------GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 33596 0.66 0.749879
Target:  5'- aGACGAUCUCGCCGucccuaAgGAUGAgGUa- -3'
miRNA:   3'- gCUGCUAGGGCGGC------UgCUGCUgUAgu -5'
16408 5' -55.5 NC_004084.1 + 33252 0.67 0.729395
Target:  5'- uCGAUGAggaCGUCGAgGACGuCGUCAg -3'
miRNA:   3'- -GCUGCUaggGCGGCUgCUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 32407 0.68 0.623078
Target:  5'- gCGuuCGGUCCCGUCGACGAgcuCGcacuCGUCGc -3'
miRNA:   3'- -GCu-GCUAGGGCGGCUGCU---GCu---GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 32048 0.71 0.476887
Target:  5'- aCGACGAUCCCGaacgCGACucgcuguuCGACGUCc -3'
miRNA:   3'- -GCUGCUAGGGCg---GCUGcu------GCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 30448 0.67 0.676745
Target:  5'- gGACGAcgUCCCGCUGGgGACGu--UCc -3'
miRNA:   3'- gCUGCU--AGGGCGGCUgCUGCuguAGu -5'
16408 5' -55.5 NC_004084.1 + 30267 0.66 0.769906
Target:  5'- uGGCGAUUUCGgaCGAauCGGCGugGUCGg -3'
miRNA:   3'- gCUGCUAGGGCg-GCU--GCUGCugUAGU- -5'
16408 5' -55.5 NC_004084.1 + 29989 0.67 0.697999
Target:  5'- cCGGCGucgaCCugguCGCUGGUGACGACGUCAg -3'
miRNA:   3'- -GCUGCua--GG----GCGGCUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 29487 0.67 0.697999
Target:  5'- uCGACGcgCUCcCCGAgGcCGACGUCGc -3'
miRNA:   3'- -GCUGCuaGGGcGGCUgCuGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 29422 0.67 0.708539
Target:  5'- -cGCGGUUgCCGUCGACGGCGAgCuUCAc -3'
miRNA:   3'- gcUGCUAG-GGCGGCUGCUGCU-GuAGU- -5'
16408 5' -55.5 NC_004084.1 + 29068 0.66 0.769906
Target:  5'- gCGACcg-CCCGCuCGGgGGCGuCGUCGc -3'
miRNA:   3'- -GCUGcuaGGGCG-GCUgCUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 29011 0.66 0.769906
Target:  5'- gCGAUGcaggagCCCaUCGAgGGCGGCAUCAc -3'
miRNA:   3'- -GCUGCua----GGGcGGCUgCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 28989 0.66 0.769906
Target:  5'- gCGGUGAagCUCGCCGuCGACGGCAa-- -3'
miRNA:   3'- -GCUGCUa-GGGCGGCuGCUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 28803 0.66 0.749879
Target:  5'- cCGACagccaGGUgCCGuuGugGGCGAgCAUCGc -3'
miRNA:   3'- -GCUG-----CUAgGGCggCugCUGCU-GUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.