miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 44912 0.72 0.410234
Target:  5'- gCGACGA-CCCGCgccuagcugaggUGACGAUGACGUUc -3'
miRNA:   3'- -GCUGCUaGGGCG------------GCUGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 41743 0.73 0.352969
Target:  5'- uGACGAUCgggacgaCGCCGGCGAcgaggaccucccggaCGACGUCGa -3'
miRNA:   3'- gCUGCUAGg------GCGGCUGCU---------------GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 39763 0.73 0.357935
Target:  5'- aGGCuGAUCCCGacgccgaagaCGGCGACGAgGUCGg -3'
miRNA:   3'- gCUG-CUAGGGCg---------GCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21465 0.73 0.357935
Target:  5'- gGACGcugaacaguccGUaCCCGaCCGACGGCGAUAUCu -3'
miRNA:   3'- gCUGC-----------UA-GGGC-GGCUGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 14813 0.73 0.36632
Target:  5'- gGugGAUCCUGuCCGACGAagGGCAUgAg -3'
miRNA:   3'- gCugCUAGGGC-GGCUGCUg-CUGUAgU- -5'
16408 5' -55.5 NC_004084.1 + 3149 0.73 0.37484
Target:  5'- uGACGAUCuacacgCCGCCGACcguaGACGuCGUCGa -3'
miRNA:   3'- gCUGCUAG------GGCGGCUG----CUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 35341 0.73 0.37484
Target:  5'- cCGACG-UCCaccucgucgcguCGCCGGCGACGAUcgCGa -3'
miRNA:   3'- -GCUGCuAGG------------GCGGCUGCUGCUGuaGU- -5'
16408 5' -55.5 NC_004084.1 + 21710 0.73 0.383493
Target:  5'- uCGGCGA--CCGUCGACGagauccGCGACGUCAu -3'
miRNA:   3'- -GCUGCUagGGCGGCUGC------UGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 36424 0.72 0.401192
Target:  5'- uCGACGAUCgCCGCaGACcuguACGACAUCc -3'
miRNA:   3'- -GCUGCUAG-GGCGgCUGc---UGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 22526 0.73 0.349685
Target:  5'- aCGACGAucgccUCCgGCCGAaGACGACcgAUCAc -3'
miRNA:   3'- -GCUGCU-----AGGgCGGCUgCUGCUG--UAGU- -5'
16408 5' -55.5 NC_004084.1 + 14366 0.74 0.333594
Target:  5'- gCGAgGAUCaccaucuguaCGgCGGCGGCGACAUCAa -3'
miRNA:   3'- -GCUgCUAGg---------GCgGCUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 5467 0.74 0.333594
Target:  5'- gCGACGAUCacgacgaCGCCGACGGCcaGAuCGUCGc -3'
miRNA:   3'- -GCUGCUAGg------GCGGCUGCUG--CU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 8250 0.78 0.172847
Target:  5'- aGACGAUCgaCGCCGcUGACGACAUCc -3'
miRNA:   3'- gCUGCUAGg-GCGGCuGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 20721 0.76 0.248553
Target:  5'- uCGGgGAUCCCGuuGcugguguCGACGACGUCGa -3'
miRNA:   3'- -GCUgCUAGGGCggCu------GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 48965 0.76 0.248553
Target:  5'- -cACGAUgCCGCCGACuACGGCGUCc -3'
miRNA:   3'- gcUGCUAgGGCGGCUGcUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 1807 0.76 0.261374
Target:  5'- cCGGCGAaCUCGCCGAcCGGCGACGa-- -3'
miRNA:   3'- -GCUGCUaGGGCGGCU-GCUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 4298 0.75 0.288622
Target:  5'- aCGACG-UCCCGCCGGUGAUcgcgGGCGUCGu -3'
miRNA:   3'- -GCUGCuAGGGCGGCUGCUG----CUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 40972 0.75 0.295053
Target:  5'- uCGACGAUCCCGgacgaacCCGACGAguuccggaaCGAgAUCAa -3'
miRNA:   3'- -GCUGCUAGGGC-------GGCUGCU---------GCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 57522 0.74 0.306017
Target:  5'- cCGACGAcgCCGacagcgauaccgauuCCGACGGCGACGUCGa -3'
miRNA:   3'- -GCUGCUagGGC---------------GGCUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 8805 0.74 0.325755
Target:  5'- gCGACGAgaUCuCCGUCGACGGCGAacUCGc -3'
miRNA:   3'- -GCUGCU--AG-GGCGGCUGCUGCUguAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.