miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 36424 0.72 0.401192
Target:  5'- uCGACGAUCgCCGCaGACcuguACGACAUCc -3'
miRNA:   3'- -GCUGCUAG-GGCGgCUGc---UGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 44912 0.72 0.410234
Target:  5'- gCGACGA-CCCGCgccuagcugaggUGACGAUGACGUUc -3'
miRNA:   3'- -GCUGCUaGGGCG------------GCUGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 21154 0.71 0.486848
Target:  5'- aCGACGucagauucGUUCU-CCGAUGACGACAUCGa -3'
miRNA:   3'- -GCUGC--------UAGGGcGGCUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 3816 0.7 0.507057
Target:  5'- gCGAccuCGAUCCagucuucgucgaCGCCGACGACGGC-UCc -3'
miRNA:   3'- -GCU---GCUAGG------------GCGGCUGCUGCUGuAGu -5'
16408 5' -55.5 NC_004084.1 + 53441 0.7 0.527615
Target:  5'- aGugGGUcCCCGCCGAucuccuCGugGGuCGUCGu -3'
miRNA:   3'- gCugCUA-GGGCGGCU------GCugCU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 44802 0.7 0.527615
Target:  5'- aCGACGGUCCCGaccacCCGGucggUGACGGUAUCGa -3'
miRNA:   3'- -GCUGCUAGGGC-----GGCU----GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 22731 0.7 0.527615
Target:  5'- cCGACGAagUCCGCCcagcgguACGAgGACAUCGa -3'
miRNA:   3'- -GCUGCUa-GGGCGGc------UGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 22311 0.7 0.53801
Target:  5'- uGACGAUacgCCGCCGGacgaaGACGACGa-- -3'
miRNA:   3'- gCUGCUAg--GGCGGCUg----CUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 2283 0.7 0.53801
Target:  5'- gGGCuGGUCgaCGCCGACGAcacugcggcgcaCGACGUCGa -3'
miRNA:   3'- gCUG-CUAGg-GCGGCUGCU------------GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 48094 0.7 0.53801
Target:  5'- aGACGAa-CCGCUGACcgucagugagGACGGCAUCu -3'
miRNA:   3'- gCUGCUagGGCGGCUG----------CUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 1242 0.71 0.476887
Target:  5'- gGGCGAUCgCGCCcAUcuccucauccugGACGACAUCAu -3'
miRNA:   3'- gCUGCUAGgGCGGcUG------------CUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 32048 0.71 0.476887
Target:  5'- aCGACGAUCCCGaacgCGACucgcuguuCGACGUCc -3'
miRNA:   3'- -GCUGCUAGGGCg---GCUGcu------GCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 8929 0.72 0.419402
Target:  5'- aGACGAUCCggaugaCGCCGACGACuccgagGACAg-- -3'
miRNA:   3'- gCUGCUAGG------GCGGCUGCUG------CUGUagu -5'
16408 5' -55.5 NC_004084.1 + 6722 0.72 0.425893
Target:  5'- uGGCGGUCCCuuugaugccgccgaGuCCGAUGACGGCGUa- -3'
miRNA:   3'- gCUGCUAGGG--------------C-GGCUGCUGCUGUAgu -5'
16408 5' -55.5 NC_004084.1 + 39699 0.72 0.438104
Target:  5'- uCGAcCGAaCCCGCCaguGACGGCGACGa-- -3'
miRNA:   3'- -GCU-GCUaGGGCGG---CUGCUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 44320 0.72 0.438104
Target:  5'- gGACacUgCCGCC-ACGACGACAUCGa -3'
miRNA:   3'- gCUGcuAgGGCGGcUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 53249 0.72 0.438104
Target:  5'- gGGCGGUCgUCGaCGGCGACGAgAUCGg -3'
miRNA:   3'- gCUGCUAG-GGCgGCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 58020 0.72 0.438104
Target:  5'- uCGACGAcgUCUGCgacauCGGCGGCGACGUCc -3'
miRNA:   3'- -GCUGCUa-GGGCG-----GCUGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 24176 0.71 0.447633
Target:  5'- cCGACGcUCCCGCacaccuACGACGACAgccguUCAg -3'
miRNA:   3'- -GCUGCuAGGGCGgc----UGCUGCUGU-----AGU- -5'
16408 5' -55.5 NC_004084.1 + 2572 0.71 0.476887
Target:  5'- aGACG-UCCgCGUCGuuGACGGCAUCc -3'
miRNA:   3'- gCUGCuAGG-GCGGCugCUGCUGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.