miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 1847 0.69 0.559003
Target:  5'- uGugGcUCCUGCagcgCGACgGACGACGUCGc -3'
miRNA:   3'- gCugCuAGGGCG----GCUG-CUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 42715 0.69 0.566406
Target:  5'- aCGGCGAUCaCCGUCaccgaucgcgagcaGGCGAagGACAUCGg -3'
miRNA:   3'- -GCUGCUAG-GGCGG--------------CUGCUg-CUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 40565 0.69 0.569586
Target:  5'- -aGCGAUCgaUGCgGGCGACGAgGUCAc -3'
miRNA:   3'- gcUGCUAGg-GCGgCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 17388 0.69 0.580218
Target:  5'- uGAgGAUCUCGCCGGCaGA-GugAUCGa -3'
miRNA:   3'- gCUgCUAGGGCGGCUG-CUgCugUAGU- -5'
16408 5' -55.5 NC_004084.1 + 15560 0.69 0.580218
Target:  5'- uCGACGggUCgGUCGAUGcgcuaGCGGCAUCAa -3'
miRNA:   3'- -GCUGCuaGGgCGGCUGC-----UGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 51526 0.69 0.590892
Target:  5'- aGACGGUCgCGaucCCGACGuaccuCGGCAUCc -3'
miRNA:   3'- gCUGCUAGgGC---GGCUGCu----GCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 7530 0.69 0.601598
Target:  5'- aGugGGUgCaGCCGAUccagGACGGCAUCGa -3'
miRNA:   3'- gCugCUAgGgCGGCUG----CUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 48094 0.7 0.53801
Target:  5'- aGACGAa-CCGCUGACcgucagugagGACGGCAUCu -3'
miRNA:   3'- gCUGCUagGGCGGCUG----------CUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 2283 0.7 0.53801
Target:  5'- gGGCuGGUCgaCGCCGACGAcacugcggcgcaCGACGUCGa -3'
miRNA:   3'- gCUG-CUAGg-GCGGCUGCU------------GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 22311 0.7 0.53801
Target:  5'- uGACGAUacgCCGCCGGacgaaGACGACGa-- -3'
miRNA:   3'- gCUGCUAg--GGCGGCUg----CUGCUGUagu -5'
16408 5' -55.5 NC_004084.1 + 24176 0.71 0.447633
Target:  5'- cCGACGcUCCCGCacaccuACGACGACAgccguUCAg -3'
miRNA:   3'- -GCUGCuAGGGCGgc----UGCUGCUGU-----AGU- -5'
16408 5' -55.5 NC_004084.1 + 2572 0.71 0.476887
Target:  5'- aGACG-UCCgCGUCGuuGACGGCAUCc -3'
miRNA:   3'- gCUGCuAGG-GCGGCugCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 32048 0.71 0.476887
Target:  5'- aCGACGAUCCCGaacgCGACucgcuguuCGACGUCc -3'
miRNA:   3'- -GCUGCUAGGGCg---GCUGcu------GCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 1242 0.71 0.476887
Target:  5'- gGGCGAUCgCGCCcAUcuccucauccugGACGACAUCAu -3'
miRNA:   3'- gCUGCUAGgGCGGcUG------------CUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21154 0.71 0.486848
Target:  5'- aCGACGucagauucGUUCU-CCGAUGACGACAUCGa -3'
miRNA:   3'- -GCUGC--------UAGGGcGGCUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 3816 0.7 0.507057
Target:  5'- gCGAccuCGAUCCagucuucgucgaCGCCGACGACGGC-UCc -3'
miRNA:   3'- -GCU---GCUAGG------------GCGGCUGCUGCUGuAGu -5'
16408 5' -55.5 NC_004084.1 + 53441 0.7 0.527615
Target:  5'- aGugGGUcCCCGCCGAucuccuCGugGGuCGUCGu -3'
miRNA:   3'- gCugCUA-GGGCGGCU------GCugCU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 44802 0.7 0.527615
Target:  5'- aCGACGGUCCCGaccacCCGGucggUGACGGUAUCGa -3'
miRNA:   3'- -GCUGCUAGGGC-----GGCU----GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 22731 0.7 0.527615
Target:  5'- cCGACGAagUCCGCCcagcgguACGAgGACAUCGa -3'
miRNA:   3'- -GCUGCUa-GGGCGGc------UGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 42312 0.69 0.611256
Target:  5'- gCGACGAUCgcgacgaCCGUCGG-GACGAgAUCGa -3'
miRNA:   3'- -GCUGCUAG-------GGCGGCUgCUGCUgUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.