Results 101 - 120 of 176 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 42715 | 0.69 | 0.566406 |
Target: 5'- aCGGCGAUCaCCGUCaccgaucgcgagcaGGCGAagGACAUCGg -3' miRNA: 3'- -GCUGCUAG-GGCGG--------------CUGCUg-CUGUAGU- -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 1847 | 0.69 | 0.559003 |
Target: 5'- uGugGcUCCUGCagcgCGACgGACGACGUCGc -3' miRNA: 3'- gCugCuAGGGCG----GCUG-CUGCUGUAGU- -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 1242 | 0.71 | 0.476887 |
Target: 5'- gGGCGAUCgCGCCcAUcuccucauccugGACGACAUCAu -3' miRNA: 3'- gCUGCUAGgGCGGcUG------------CUGCUGUAGU- -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 21154 | 0.71 | 0.486848 |
Target: 5'- aCGACGucagauucGUUCU-CCGAUGACGACAUCGa -3' miRNA: 3'- -GCUGC--------UAGGGcGGCUGCUGCUGUAGU- -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 3816 | 0.7 | 0.507057 |
Target: 5'- gCGAccuCGAUCCagucuucgucgaCGCCGACGACGGC-UCc -3' miRNA: 3'- -GCU---GCUAGG------------GCGGCUGCUGCUGuAGu -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 53441 | 0.7 | 0.527615 |
Target: 5'- aGugGGUcCCCGCCGAucuccuCGugGGuCGUCGu -3' miRNA: 3'- gCugCUA-GGGCGGCU------GCugCU-GUAGU- -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 44802 | 0.7 | 0.527615 |
Target: 5'- aCGACGGUCCCGaccacCCGGucggUGACGGUAUCGa -3' miRNA: 3'- -GCUGCUAGGGC-----GGCU----GCUGCUGUAGU- -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 22731 | 0.7 | 0.527615 |
Target: 5'- cCGACGAagUCCGCCcagcgguACGAgGACAUCGa -3' miRNA: 3'- -GCUGCUa-GGGCGGc------UGCUgCUGUAGU- -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 22311 | 0.7 | 0.53801 |
Target: 5'- uGACGAUacgCCGCCGGacgaaGACGACGa-- -3' miRNA: 3'- gCUGCUAg--GGCGGCUg----CUGCUGUagu -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 2283 | 0.7 | 0.53801 |
Target: 5'- gGGCuGGUCgaCGCCGACGAcacugcggcgcaCGACGUCGa -3' miRNA: 3'- gCUG-CUAGg-GCGGCUGCU------------GCUGUAGU- -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 48094 | 0.7 | 0.53801 |
Target: 5'- aGACGAa-CCGCUGACcgucagugagGACGGCAUCu -3' miRNA: 3'- gCUGCUagGGCGGCUG----------CUGCUGUAGu -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 21221 | 0.7 | 0.53801 |
Target: 5'- gCGGCGAa---GCCGGUGACGACAUCGu -3' miRNA: 3'- -GCUGCUagggCGGCUGCUGCUGUAGU- -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 11832 | 0.69 | 0.559003 |
Target: 5'- aCGA-GGUCgaaUCGCCuGACGGCGAUAUCGa -3' miRNA: 3'- -GCUgCUAG---GGCGG-CUGCUGCUGUAGU- -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 12666 | 0.69 | 0.559003 |
Target: 5'- uGACG-UCCCaGagugggaCGACGACGACGUUg -3' miRNA: 3'- gCUGCuAGGG-Cg------GCUGCUGCUGUAGu -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 29011 | 0.66 | 0.769906 |
Target: 5'- gCGAUGcaggagCCCaUCGAgGGCGGCAUCAc -3' miRNA: 3'- -GCUGCua----GGGcGGCUgCUGCUGUAGU- -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 5160 | 0.66 | 0.769906 |
Target: 5'- cCGGCccGAUCUcguCGCCGuCGACGACcgCc -3' miRNA: 3'- -GCUG--CUAGG---GCGGCuGCUGCUGuaGu -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 55903 | 0.66 | 0.769906 |
Target: 5'- aCGACGAU-CCGCCGGaggaGugGGCc--- -3' miRNA: 3'- -GCUGCUAgGGCGGCUg---CugCUGuagu -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 58046 | 0.66 | 0.778746 |
Target: 5'- uCGAUGAaguucUCCCgguaggcGCCGuguuCGACGGCGUUg -3' miRNA: 3'- -GCUGCU-----AGGG-------CGGCu---GCUGCUGUAGu -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 47303 | 0.66 | 0.779721 |
Target: 5'- gGAcCGA-CUCGuCCGACGA-GACGUCGa -3' miRNA: 3'- gCU-GCUaGGGC-GGCUGCUgCUGUAGU- -5' |
|||||||
16408 | 5' | -55.5 | NC_004084.1 | + | 52938 | 0.79 | 0.15122 |
Target: 5'- gCGACGAUCUgGCCGuCGGCGuCGUCGu -3' miRNA: 3'- -GCUGCUAGGgCGGCuGCUGCuGUAGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home