miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 9448 0.66 0.779721
Target:  5'- -uGCGGga-CGCCGuaguCGGCGGCAUCGu -3'
miRNA:   3'- gcUGCUaggGCGGCu---GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 33252 0.67 0.729395
Target:  5'- uCGAUGAggaCGUCGAgGACGuCGUCAg -3'
miRNA:   3'- -GCUGCUaggGCGGCUgCUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 16915 0.67 0.729395
Target:  5'- aGGCGAUCgUgGCCGgguGCGGuuCGGCAUCGg -3'
miRNA:   3'- gCUGCUAG-GgCGGC---UGCU--GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 52938 0.79 0.15122
Target:  5'- gCGACGAUCUgGCCGuCGGCGuCGUCGu -3'
miRNA:   3'- -GCUGCUAGGgCGGCuGCUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 5160 0.66 0.769906
Target:  5'- cCGGCccGAUCUcguCGCCGuCGACGACcgCc -3'
miRNA:   3'- -GCUG--CUAGG---GCGGCuGCUGCUGuaGu -5'
16408 5' -55.5 NC_004084.1 + 29011 0.66 0.769906
Target:  5'- gCGAUGcaggagCCCaUCGAgGGCGGCAUCAc -3'
miRNA:   3'- -GCUGCua----GGGcGGCUgCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 14844 0.66 0.768916
Target:  5'- gGAgGAUCCgCGCCucgucggGAUGACGGCcgCc -3'
miRNA:   3'- gCUgCUAGG-GCGG-------CUGCUGCUGuaGu -5'
16408 5' -55.5 NC_004084.1 + 40253 0.66 0.763951
Target:  5'- uGACGugcucgaucuccaucGUCCacuCGCCGGCGACGuCGUUc -3'
miRNA:   3'- gCUGC---------------UAGG---GCGGCUGCUGCuGUAGu -5'
16408 5' -55.5 NC_004084.1 + 1842 0.66 0.759955
Target:  5'- gGACGGUgaacucUUCGUCGACGAgGAUGUCu -3'
miRNA:   3'- gCUGCUA------GGGCGGCUGCUgCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 5747 0.66 0.739689
Target:  5'- gGAUGAUCgCC-UCGACGACGAUcUCc -3'
miRNA:   3'- gCUGCUAG-GGcGGCUGCUGCUGuAGu -5'
16408 5' -55.5 NC_004084.1 + 18694 0.66 0.749879
Target:  5'- uCGuC-AUCCuCGUCGACGGCGuCGUCGc -3'
miRNA:   3'- -GCuGcUAGG-GCGGCUGCUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 8336 0.66 0.759955
Target:  5'- gGAUGAUCCaGCCGGCGuuuuCGAgAgCAa -3'
miRNA:   3'- gCUGCUAGGgCGGCUGCu---GCUgUaGU- -5'
16408 5' -55.5 NC_004084.1 + 47303 0.66 0.779721
Target:  5'- gGAcCGA-CUCGuCCGACGA-GACGUCGa -3'
miRNA:   3'- gCU-GCUaGGGC-GGCUGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 33596 0.66 0.749879
Target:  5'- aGACGAUCUCGCCGucccuaAgGAUGAgGUa- -3'
miRNA:   3'- gCUGCUAGGGCGGC------UgCUGCUgUAgu -5'
16408 5' -55.5 NC_004084.1 + 58046 0.66 0.778746
Target:  5'- uCGAUGAaguucUCCCgguaggcGCCGuguuCGACGGCGUUg -3'
miRNA:   3'- -GCUGCU-----AGGG-------CGGCu---GCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 28429 0.66 0.763951
Target:  5'- aGACGAUccucaaCCgguucuacaaggacaCGCgCGACGAgGACAUCAc -3'
miRNA:   3'- gCUGCUA------GG---------------GCG-GCUGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 3642 0.66 0.749879
Target:  5'- gGGCGAUCaguagCGCUGGCGGggguugggcuUGGCGUCGa -3'
miRNA:   3'- gCUGCUAGg----GCGGCUGCU----------GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21222 0.67 0.729395
Target:  5'- aGGCGGuacuUCCCGUCGucggucuucuCGAUGAUGUCGa -3'
miRNA:   3'- gCUGCU----AGGGCGGCu---------GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 55903 0.66 0.769906
Target:  5'- aCGACGAU-CCGCCGGaggaGugGGCc--- -3'
miRNA:   3'- -GCUGCUAgGGCGGCUg---CugCUGuagu -5'
16408 5' -55.5 NC_004084.1 + 8297 0.66 0.769906
Target:  5'- uCGGC-AUCCCGuuGGgcuucguccaGACGGCGUCGg -3'
miRNA:   3'- -GCUGcUAGGGCggCUg---------CUGCUGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.