miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 54246 0.67 0.708539
Target:  5'- -aGCGAUCagCGCCGuCGGCGAgGUUg -3'
miRNA:   3'- gcUGCUAGg-GCGGCuGCUGCUgUAGu -5'
16408 5' -55.5 NC_004084.1 + 16915 0.67 0.729395
Target:  5'- aGGCGAUCgUgGCCGgguGCGGuuCGGCAUCGg -3'
miRNA:   3'- gCUGCUAG-GgCGGC---UGCU--GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 8336 0.66 0.759955
Target:  5'- gGAUGAUCCaGCCGGCGuuuuCGAgAgCAa -3'
miRNA:   3'- gCUGCUAGGgCGGCUGCu---GCUgUaGU- -5'
16408 5' -55.5 NC_004084.1 + 55903 0.66 0.769906
Target:  5'- aCGACGAU-CCGCCGGaggaGugGGCc--- -3'
miRNA:   3'- -GCUGCUAgGGCGGCUg---CugCUGuagu -5'
16408 5' -55.5 NC_004084.1 + 49340 0.69 0.601598
Target:  5'- uCGGCGAUCgUGUCGAgGugaucguCGACGUCGc -3'
miRNA:   3'- -GCUGCUAGgGCGGCUgCu------GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 6689 0.67 0.696941
Target:  5'- uCGACGAcgUCCaucucgaggucaaCGCCGGCGAUGucCGUCc -3'
miRNA:   3'- -GCUGCU--AGG-------------GCGGCUGCUGCu-GUAGu -5'
16408 5' -55.5 NC_004084.1 + 33252 0.67 0.729395
Target:  5'- uCGAUGAggaCGUCGAgGACGuCGUCAg -3'
miRNA:   3'- -GCUGCUaggGCGGCUgCUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 58046 0.66 0.778746
Target:  5'- uCGAUGAaguucUCCCgguaggcGCCGuguuCGACGGCGUUg -3'
miRNA:   3'- -GCUGCU-----AGGG-------CGGCu---GCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 29487 0.67 0.697999
Target:  5'- uCGACGcgCUCcCCGAgGcCGACGUCGc -3'
miRNA:   3'- -GCUGCuaGGGcGGCUgCuGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 47303 0.66 0.779721
Target:  5'- gGAcCGA-CUCGuCCGACGA-GACGUCGa -3'
miRNA:   3'- gCU-GCUaGGGC-GGCUGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21222 0.67 0.729395
Target:  5'- aGGCGGuacuUCCCGUCGucggucuucuCGAUGAUGUCGa -3'
miRNA:   3'- gCUGCU----AGGGCGGCu---------GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 3013 0.67 0.708539
Target:  5'- cCGGCGAUCauGCCGAguauguCGGCGAUAcCGg -3'
miRNA:   3'- -GCUGCUAGggCGGCU------GCUGCUGUaGU- -5'
16408 5' -55.5 NC_004084.1 + 33596 0.66 0.749879
Target:  5'- aGACGAUCUCGCCGucccuaAgGAUGAgGUa- -3'
miRNA:   3'- gCUGCUAGGGCGGC------UgCUGCUgUAgu -5'
16408 5' -55.5 NC_004084.1 + 1842 0.66 0.759955
Target:  5'- gGACGGUgaacucUUCGUCGACGAgGAUGUCu -3'
miRNA:   3'- gCUGCUA------GGGCGGCUGCUgCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 14844 0.66 0.768916
Target:  5'- gGAgGAUCCgCGCCucgucggGAUGACGGCcgCc -3'
miRNA:   3'- gCUgCUAGG-GCGG-------CUGCUGCUGuaGu -5'
16408 5' -55.5 NC_004084.1 + 5160 0.66 0.769906
Target:  5'- cCGGCccGAUCUcguCGCCGuCGACGACcgCc -3'
miRNA:   3'- -GCUG--CUAGG---GCGGCuGCUGCUGuaGu -5'
16408 5' -55.5 NC_004084.1 + 16728 0.69 0.56323
Target:  5'- gGACGcgCUCGCCGGucugcaucgcggccuCGAUGACGUUg -3'
miRNA:   3'- gCUGCuaGGGCGGCU---------------GCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 23572 0.69 0.601598
Target:  5'- gCGAUGcGUCUCGU--ACGACGACGUCGu -3'
miRNA:   3'- -GCUGC-UAGGGCGgcUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21757 0.68 0.65533
Target:  5'- gGACGGUUCCaCgGGgauCGGCGGCAUCGa -3'
miRNA:   3'- gCUGCUAGGGcGgCU---GCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 9910 0.67 0.691645
Target:  5'- aGAuCGAaCCCGCCGAUgccgcuaaagagugaGACGuGCGUCGg -3'
miRNA:   3'- gCU-GCUaGGGCGGCUG---------------CUGC-UGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.