miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 11843 0.68 0.623078
Target:  5'- aCGACGAUCgCCgcgaugccgauGCCGAgucCGACcagGGCAUCAg -3'
miRNA:   3'- -GCUGCUAG-GG-----------CGGCU---GCUG---CUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 33252 0.67 0.729395
Target:  5'- uCGAUGAggaCGUCGAgGACGuCGUCAg -3'
miRNA:   3'- -GCUGCUaggGCGGCUgCUGCuGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 58046 0.66 0.778746
Target:  5'- uCGAUGAaguucUCCCgguaggcGCCGuguuCGACGGCGUUg -3'
miRNA:   3'- -GCUGCU-----AGGG-------CGGCu---GCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 53080 0.68 0.644587
Target:  5'- uCGcCG--CCCGCuCGGCGACGugAUCu -3'
miRNA:   3'- -GCuGCuaGGGCG-GCUGCUGCugUAGu -5'
16408 5' -55.5 NC_004084.1 + 47303 0.66 0.779721
Target:  5'- gGAcCGA-CUCGuCCGACGA-GACGUCGa -3'
miRNA:   3'- gCU-GCUaGGGC-GGCUGCUgCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 55349 0.73 0.352969
Target:  5'- uCGACGAgcggCCCGUCGACGaguuccucgagggugGCGAuCAUCGc -3'
miRNA:   3'- -GCUGCUa---GGGCGGCUGC---------------UGCU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 5160 0.66 0.769906
Target:  5'- cCGGCccGAUCUcguCGCCGuCGACGACcgCc -3'
miRNA:   3'- -GCUG--CUAGG---GCGGCuGCUGCUGuaGu -5'
16408 5' -55.5 NC_004084.1 + 48382 0.73 0.383493
Target:  5'- uGAUaGGUCaCCGUCGACG-CGGCAUCGu -3'
miRNA:   3'- gCUG-CUAG-GGCGGCUGCuGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 3796 0.72 0.410234
Target:  5'- aCGACGAUUcgauacgugacgCCGCCGAUGACuGAC-UCGa -3'
miRNA:   3'- -GCUGCUAG------------GGCGGCUGCUG-CUGuAGU- -5'
16408 5' -55.5 NC_004084.1 + 389 0.71 0.486848
Target:  5'- gGACG-UCgCCGCCGAUGucgcaGACGUCGu -3'
miRNA:   3'- gCUGCuAG-GGCGGCUGCug---CUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 35904 0.7 0.517295
Target:  5'- aGGCGAUCgUCGUCGAgGAUGACGcguUCAc -3'
miRNA:   3'- gCUGCUAG-GGCGGCUgCUGCUGU---AGU- -5'
16408 5' -55.5 NC_004084.1 + 16728 0.69 0.56323
Target:  5'- gGACGcgCUCGCCGGucugcaucgcggccuCGAUGACGUUg -3'
miRNA:   3'- gCUGCuaGGGCGGCU---------------GCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 23572 0.69 0.601598
Target:  5'- gCGAUGcGUCUCGU--ACGACGACGUCGu -3'
miRNA:   3'- -GCUGC-UAGGGCGgcUGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 40453 0.68 0.666053
Target:  5'- cCGACGAUUCCGCCGucauCGGuuguuucuuCgGACGUCc -3'
miRNA:   3'- -GCUGCUAGGGCGGCu---GCU---------G-CUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 29487 0.67 0.697999
Target:  5'- uCGACGcgCUCcCCGAgGcCGACGUCGc -3'
miRNA:   3'- -GCUGCuaGGGcGGCUgCuGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 54246 0.67 0.708539
Target:  5'- -aGCGAUCagCGCCGuCGGCGAgGUUg -3'
miRNA:   3'- gcUGCUAGg-GCGGCuGCUGCUgUAGu -5'
16408 5' -55.5 NC_004084.1 + 16915 0.67 0.729395
Target:  5'- aGGCGAUCgUgGCCGgguGCGGuuCGGCAUCGg -3'
miRNA:   3'- gCUGCUAG-GgCGGC---UGCU--GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 33596 0.66 0.749879
Target:  5'- aGACGAUCUCGCCGucccuaAgGAUGAgGUa- -3'
miRNA:   3'- gCUGCUAGGGCGGC------UgCUGCUgUAgu -5'
16408 5' -55.5 NC_004084.1 + 1842 0.66 0.759955
Target:  5'- gGACGGUgaacucUUCGUCGACGAgGAUGUCu -3'
miRNA:   3'- gCUGCUA------GGGCGGCUGCUgCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 14844 0.66 0.768916
Target:  5'- gGAgGAUCCgCGCCucgucggGAUGACGGCcgCc -3'
miRNA:   3'- gCUgCUAGG-GCGG-------CUGCUGCUGuaGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.