miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16408 5' -55.5 NC_004084.1 + 56604 0.66 0.749879
Target:  5'- gCGGCG-UCgUCGCCGGuCGGCGAguUCGc -3'
miRNA:   3'- -GCUGCuAG-GGCGGCU-GCUGCUguAGU- -5'
16408 5' -55.5 NC_004084.1 + 48382 0.73 0.383493
Target:  5'- uGAUaGGUCaCCGUCGACG-CGGCAUCGu -3'
miRNA:   3'- gCUG-CUAG-GGCGGCUGCuGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 58020 0.72 0.438104
Target:  5'- uCGACGAcgUCUGCgacauCGGCGGCGACGUCc -3'
miRNA:   3'- -GCUGCUa-GGGCG-----GCUGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 24176 0.71 0.447633
Target:  5'- cCGACGcUCCCGCacaccuACGACGACAgccguUCAg -3'
miRNA:   3'- -GCUGCuAGGGCGgc----UGCUGCUGU-----AGU- -5'
16408 5' -55.5 NC_004084.1 + 40972 0.75 0.295053
Target:  5'- uCGACGAUCCCGgacgaacCCGACGAguuccggaaCGAgAUCAa -3'
miRNA:   3'- -GCUGCUAGGGC-------GGCUGCU---------GCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 32048 0.71 0.476887
Target:  5'- aCGACGAUCCCGaacgCGACucgcuguuCGACGUCc -3'
miRNA:   3'- -GCUGCUAGGGCg---GCUGcu------GCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 47255 0.68 0.648886
Target:  5'- aCGACcggCUCGCCGGCGccuacuacgaggucgACGACGUCc -3'
miRNA:   3'- -GCUGcuaGGGCGGCUGC---------------UGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 1242 0.71 0.476887
Target:  5'- gGGCGAUCgCGCCcAUcuccucauccugGACGACAUCAu -3'
miRNA:   3'- gCUGCUAGgGCGGcUG------------CUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 2572 0.71 0.476887
Target:  5'- aGACG-UCCgCGUCGuuGACGGCAUCc -3'
miRNA:   3'- gCUGCuAGG-GCGGCugCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 23362 0.68 0.623078
Target:  5'- uGGCGAccgCCUGCCGGuaucaGGCGAuCAUCGa -3'
miRNA:   3'- gCUGCUa--GGGCGGCUg----CUGCU-GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 58199 0.68 0.623078
Target:  5'- aCGACGAcuccCCCGCCGAUGGCcguGCGg-- -3'
miRNA:   3'- -GCUGCUa---GGGCGGCUGCUGc--UGUagu -5'
16408 5' -55.5 NC_004084.1 + 48021 0.68 0.633833
Target:  5'- uCGACGA-CCUGgaCGACGAcgagcuCGACGUCGa -3'
miRNA:   3'- -GCUGCUaGGGCg-GCUGCU------GCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 36943 0.68 0.644587
Target:  5'- aGGCGAUCgCCGCCcucGAgGGCGAgccgguuccuCGUCAc -3'
miRNA:   3'- gCUGCUAG-GGCGG---CUgCUGCU----------GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 26361 0.68 0.644587
Target:  5'- gGACGccgcaaccgaAUCCauCGCCGucuggucagacGCGACGGCAUCGa -3'
miRNA:   3'- gCUGC----------UAGG--GCGGC-----------UGCUGCUGUAGU- -5'
16408 5' -55.5 NC_004084.1 + 10464 0.68 0.65533
Target:  5'- aGGCGAUCCaggacgGCCuGACGgACGGCcUCGa -3'
miRNA:   3'- gCUGCUAGGg-----CGG-CUGC-UGCUGuAGU- -5'
16408 5' -55.5 NC_004084.1 + 20864 0.68 0.666053
Target:  5'- aCGuCGA-CCgCGCCGGCGAUGGaAUCGa -3'
miRNA:   3'- -GCuGCUaGG-GCGGCUGCUGCUgUAGU- -5'
16408 5' -55.5 NC_004084.1 + 41477 0.68 0.666053
Target:  5'- cCGACGucgcgacgCCCGCCGAUGcCGAaCcgCAc -3'
miRNA:   3'- -GCUGCua------GGGCGGCUGCuGCU-GuaGU- -5'
16408 5' -55.5 NC_004084.1 + 32407 0.68 0.623078
Target:  5'- gCGuuCGGUCCCGUCGACGAgcuCGcacuCGUCGc -3'
miRNA:   3'- -GCu-GCUAGGGCGGCUGCU---GCu---GUAGU- -5'
16408 5' -55.5 NC_004084.1 + 21465 0.73 0.357935
Target:  5'- gGACGcugaacaguccGUaCCCGaCCGACGGCGAUAUCu -3'
miRNA:   3'- gCUGC-----------UA-GGGC-GGCUGCUGCUGUAGu -5'
16408 5' -55.5 NC_004084.1 + 39763 0.73 0.357935
Target:  5'- aGGCuGAUCCCGacgccgaagaCGGCGACGAgGUCGg -3'
miRNA:   3'- gCUG-CUAGGGCg---------GCUGCUGCUgUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.