miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16409 5' -58.9 NC_004084.1 + 38442 0.66 0.559897
Target:  5'- uGGGUCGgccccugcggCCUCgAGGAucGCgAGACCg -3'
miRNA:   3'- -UCCAGUa---------GGAGgUCCUccCGgUCUGG- -5'
16409 5' -58.9 NC_004084.1 + 49733 0.66 0.559897
Target:  5'- gAGGUC-UCCUCUucgAGGugcucgaguGGGucgcCCAGACCc -3'
miRNA:   3'- -UCCAGuAGGAGG---UCCu--------CCC----GGUCUGG- -5'
16409 5' -58.9 NC_004084.1 + 6829 0.66 0.549409
Target:  5'- ---aCGUCacgaAGGAGGGCCGGACg -3'
miRNA:   3'- uccaGUAGgaggUCCUCCCGGUCUGg -5'
16409 5' -58.9 NC_004084.1 + 21013 0.66 0.518338
Target:  5'- cAGGcCAUCCUCgAGGcgcguGGuGCUGGgACCg -3'
miRNA:   3'- -UCCaGUAGGAGgUCCu----CC-CGGUC-UGG- -5'
16409 5' -58.9 NC_004084.1 + 3603 0.66 0.518338
Target:  5'- ---aCGUCCUCCAGac-GGCCuGGACCg -3'
miRNA:   3'- uccaGUAGGAGGUCcucCCGG-UCUGG- -5'
16409 5' -58.9 NC_004084.1 + 37777 0.67 0.498016
Target:  5'- gAGGUCAaCCUgCCAGGcuuuccGGGCUucGAUCg -3'
miRNA:   3'- -UCCAGUaGGA-GGUCCu-----CCCGGu-CUGG- -5'
16409 5' -58.9 NC_004084.1 + 13562 0.67 0.478058
Target:  5'- ---aCGUCCUCCuGGAagucgcGGGCCGauccGACCu -3'
miRNA:   3'- uccaGUAGGAGGuCCU------CCCGGU----CUGG- -5'
16409 5' -58.9 NC_004084.1 + 12901 0.68 0.439382
Target:  5'- cGG-CGUCCUC--GGAGuGGCC-GACCg -3'
miRNA:   3'- uCCaGUAGGAGguCCUC-CCGGuCUGG- -5'
16409 5' -58.9 NC_004084.1 + 29029 0.68 0.402554
Target:  5'- gAGGgcggCAUCaccuUCCAGGAGGGacgcgggaucCCGGGCg -3'
miRNA:   3'- -UCCa---GUAGg---AGGUCCUCCC----------GGUCUGg -5'
16409 5' -58.9 NC_004084.1 + 27500 0.69 0.37625
Target:  5'- gAGGcgaucgaCGUCUUCCAGGAGGaCCAcGGCUa -3'
miRNA:   3'- -UCCa------GUAGGAGGUCCUCCcGGU-CUGG- -5'
16409 5' -58.9 NC_004084.1 + 19963 0.7 0.297263
Target:  5'- cGGUCucgcgAUCCUCgAGGccgcaGGGGCC-GACCc -3'
miRNA:   3'- uCCAG-----UAGGAGgUCC-----UCCCGGuCUGG- -5'
16409 5' -58.9 NC_004084.1 + 49205 0.73 0.214081
Target:  5'- cAGGUCAUCCaggacgggauccaUCCagaAGGAGGGCaGGGCg -3'
miRNA:   3'- -UCCAGUAGG-------------AGG---UCCUCCCGgUCUGg -5'
16409 5' -58.9 NC_004084.1 + 37287 0.73 0.1986
Target:  5'- cAGGaCGUCCUCUGGGAGG-CCAcguucGACCu -3'
miRNA:   3'- -UCCaGUAGGAGGUCCUCCcGGU-----CUGG- -5'
16409 5' -58.9 NC_004084.1 + 53558 0.78 0.088286
Target:  5'- gAGGUCGUCCUgCuuguGGAGGuGCCGGAUg -3'
miRNA:   3'- -UCCAGUAGGAgGu---CCUCC-CGGUCUGg -5'
16409 5' -58.9 NC_004084.1 + 20591 1.12 0.00029
Target:  5'- gAGGUCAUCCUCCAGGAGGGCCAGACCg -3'
miRNA:   3'- -UCCAGUAGGAGGUCCUCCCGGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.