Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16409 | 5' | -58.9 | NC_004084.1 | + | 20591 | 1.12 | 0.00029 |
Target: 5'- gAGGUCAUCCUCCAGGAGGGCCAGACCg -3' miRNA: 3'- -UCCAGUAGGAGGUCCUCCCGGUCUGG- -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 6829 | 0.66 | 0.549409 |
Target: 5'- ---aCGUCacgaAGGAGGGCCGGACg -3' miRNA: 3'- uccaGUAGgaggUCCUCCCGGUCUGg -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 21013 | 0.66 | 0.518338 |
Target: 5'- cAGGcCAUCCUCgAGGcgcguGGuGCUGGgACCg -3' miRNA: 3'- -UCCaGUAGGAGgUCCu----CC-CGGUC-UGG- -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 3603 | 0.66 | 0.518338 |
Target: 5'- ---aCGUCCUCCAGac-GGCCuGGACCg -3' miRNA: 3'- uccaGUAGGAGGUCcucCCGG-UCUGG- -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 27500 | 0.69 | 0.37625 |
Target: 5'- gAGGcgaucgaCGUCUUCCAGGAGGaCCAcGGCUa -3' miRNA: 3'- -UCCa------GUAGGAGGUCCUCCcGGU-CUGG- -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 19963 | 0.7 | 0.297263 |
Target: 5'- cGGUCucgcgAUCCUCgAGGccgcaGGGGCC-GACCc -3' miRNA: 3'- uCCAG-----UAGGAGgUCC-----UCCCGGuCUGG- -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 49205 | 0.73 | 0.214081 |
Target: 5'- cAGGUCAUCCaggacgggauccaUCCagaAGGAGGGCaGGGCg -3' miRNA: 3'- -UCCAGUAGG-------------AGG---UCCUCCCGgUCUGg -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 37287 | 0.73 | 0.1986 |
Target: 5'- cAGGaCGUCCUCUGGGAGG-CCAcguucGACCu -3' miRNA: 3'- -UCCaGUAGGAGGUCCUCCcGGU-----CUGG- -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 29029 | 0.68 | 0.402554 |
Target: 5'- gAGGgcggCAUCaccuUCCAGGAGGGacgcgggaucCCGGGCg -3' miRNA: 3'- -UCCa---GUAGg---AGGUCCUCCC----------GGUCUGg -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 12901 | 0.68 | 0.439382 |
Target: 5'- cGG-CGUCCUC--GGAGuGGCC-GACCg -3' miRNA: 3'- uCCaGUAGGAGguCCUC-CCGGuCUGG- -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 13562 | 0.67 | 0.478058 |
Target: 5'- ---aCGUCCUCCuGGAagucgcGGGCCGauccGACCu -3' miRNA: 3'- uccaGUAGGAGGuCCU------CCCGGU----CUGG- -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 37777 | 0.67 | 0.498016 |
Target: 5'- gAGGUCAaCCUgCCAGGcuuuccGGGCUucGAUCg -3' miRNA: 3'- -UCCAGUaGGA-GGUCCu-----CCCGGu-CUGG- -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 38442 | 0.66 | 0.559897 |
Target: 5'- uGGGUCGgccccugcggCCUCgAGGAucGCgAGACCg -3' miRNA: 3'- -UCCAGUa---------GGAGgUCCUccCGgUCUGG- -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 49733 | 0.66 | 0.559897 |
Target: 5'- gAGGUC-UCCUCUucgAGGugcucgaguGGGucgcCCAGACCc -3' miRNA: 3'- -UCCAGuAGGAGG---UCCu--------CCC----GGUCUGG- -5' |
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16409 | 5' | -58.9 | NC_004084.1 | + | 53558 | 0.78 | 0.088286 |
Target: 5'- gAGGUCGUCCUgCuuguGGAGGuGCCGGAUg -3' miRNA: 3'- -UCCAGUAGGAgGu---CCUCC-CGGUCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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