miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1641 3' -50.6 NC_001347.2 + 24290 0.66 0.999553
Target:  5'- aUCGUgUUUcGgCGGcuguuCGACAGCGGCAa -3'
miRNA:   3'- -GGCAgAAA-CgGCCau---GCUGUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 127402 0.66 0.999553
Target:  5'- gCCGaCUUUGauuuaCGGcUGCG-CGACGGCGu -3'
miRNA:   3'- -GGCaGAAACg----GCC-AUGCuGUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 126870 0.66 0.999449
Target:  5'- cCCGcacggCUUggggcugGCCGGcUACGGCGGCcGCAu -3'
miRNA:   3'- -GGCa----GAAa------CGGCC-AUGCUGUUGcUGU- -5'
1641 3' -50.6 NC_001347.2 + 229073 0.66 0.999449
Target:  5'- gUGUCUgugGCUGGcAUGAUuguGCGGCAu -3'
miRNA:   3'- gGCAGAaa-CGGCCaUGCUGu--UGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 27806 0.66 0.999437
Target:  5'- aCCGUCUUUGCCGccuucagauccucGUAUuGCGAaggUGGCGg -3'
miRNA:   3'- -GGCAGAAACGGC-------------CAUGcUGUU---GCUGU- -5'
1641 3' -50.6 NC_001347.2 + 192177 0.66 0.999323
Target:  5'- gCCGUCU---CCGGaugaGCGGCcGCGGCGc -3'
miRNA:   3'- -GGCAGAaacGGCCa---UGCUGuUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 178924 0.66 0.999323
Target:  5'- aUGUCguguacacgGCCGGggaggGCGACGugGuACAg -3'
miRNA:   3'- gGCAGaaa------CGGCCa----UGCUGUugC-UGU- -5'
1641 3' -50.6 NC_001347.2 + 159447 0.66 0.999323
Target:  5'- gUCGUCUgcgGCCGcGgccgcuCGAUGACGAUg -3'
miRNA:   3'- -GGCAGAaa-CGGC-Cau----GCUGUUGCUGu -5'
1641 3' -50.6 NC_001347.2 + 75411 0.66 0.999323
Target:  5'- gCGgCg--GCCGuGgcgGCGGCAGCGGCGc -3'
miRNA:   3'- gGCaGaaaCGGC-Ca--UGCUGUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 105071 0.66 0.999174
Target:  5'- gCCGUCcggUGaggaGG-ACGGCGACGACc -3'
miRNA:   3'- -GGCAGaa-ACgg--CCaUGCUGUUGCUGu -5'
1641 3' -50.6 NC_001347.2 + 143149 0.66 0.999174
Target:  5'- aUGUCUcugGCCGGcGCcaGACcgGACGACAg -3'
miRNA:   3'- gGCAGAaa-CGGCCaUG--CUG--UUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 97900 0.66 0.999158
Target:  5'- gUCGUCUUcggcGUCGGgcgGCGGCGguaacacACGGCGa -3'
miRNA:   3'- -GGCAGAAa---CGGCCa--UGCUGU-------UGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 199728 0.66 0.998998
Target:  5'- gCGaUCUgcggUUGCCGacGCGACGACGAUc -3'
miRNA:   3'- gGC-AGA----AACGGCcaUGCUGUUGCUGu -5'
1641 3' -50.6 NC_001347.2 + 109376 0.66 0.998998
Target:  5'- aCGagggUGCCGcccaggGCGACGACGACGu -3'
miRNA:   3'- gGCagaaACGGCca----UGCUGUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 198079 0.66 0.998998
Target:  5'- gCUGUCgc-GgCGGUcGCGACggUGACGg -3'
miRNA:   3'- -GGCAGaaaCgGCCA-UGCUGuuGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 164735 0.66 0.998998
Target:  5'- aCGUCcaggcGCUGGUGuuggcaGGCAACGGCGg -3'
miRNA:   3'- gGCAGaaa--CGGCCAUg-----CUGUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 74947 0.66 0.99879
Target:  5'- aCGUCUgcGCCGG--CGACAcauGCGAa- -3'
miRNA:   3'- gGCAGAaaCGGCCauGCUGU---UGCUgu -5'
1641 3' -50.6 NC_001347.2 + 88150 0.67 0.998546
Target:  5'- aCGUCg--GCacagcggGGUGCGGgcCAGCGACAc -3'
miRNA:   3'- gGCAGaaaCGg------CCAUGCU--GUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 229380 0.67 0.998465
Target:  5'- aCCGUCccgaaGcCCGGUGcCGACAacaaauaccgugggACGACAc -3'
miRNA:   3'- -GGCAGaaa--C-GGCCAU-GCUGU--------------UGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 153246 0.67 0.998262
Target:  5'- gCGUCg--GCCGG--CGACGGCGGu- -3'
miRNA:   3'- gGCAGaaaCGGCCauGCUGUUGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.