Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1641 | 3' | -50.6 | NC_001347.2 | + | 130381 | 1.12 | 0.011173 |
Target: 5'- aCCGUCUUUGCCGGUACGACAACGACAa -3' miRNA: 3'- -GGCAGAAACGGCCAUGCUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 102792 | 0.74 | 0.904292 |
Target: 5'- cCUGUCgacgUGCUGGUacACGGCAACGuCGa -3' miRNA: 3'- -GGCAGaa--ACGGCCA--UGCUGUUGCuGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 8207 | 0.72 | 0.946496 |
Target: 5'- -------aGCCGGUAgGACAGCGGCGc -3' miRNA: 3'- ggcagaaaCGGCCAUgCUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 95429 | 0.72 | 0.950716 |
Target: 5'- gCGgCUgugGCgGGUcGCGACGACGACAc -3' miRNA: 3'- gGCaGAaa-CGgCCA-UGCUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 17132 | 0.72 | 0.96338 |
Target: 5'- gCCGUCg--GCCGccgcccaugccacGCGACGACGACGa -3' miRNA: 3'- -GGCAGaaaCGGCca-----------UGCUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 125836 | 0.71 | 0.968473 |
Target: 5'- gCUGcaucgUGCCGGcGCGACGAUGACGc -3' miRNA: 3'- -GGCagaa-ACGGCCaUGCUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 195294 | 0.71 | 0.971388 |
Target: 5'- gCCGUagcgUGCUGGauaGCGugAGCGGCAc -3' miRNA: 3'- -GGCAgaa-ACGGCCa--UGCugUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 106363 | 0.71 | 0.974104 |
Target: 5'- gCGUC---GCCaGUAcCGACGACGACAg -3' miRNA: 3'- gGCAGaaaCGGcCAU-GCUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 184940 | 0.7 | 0.978965 |
Target: 5'- gCCGUCUgcagcucGUCGGccgGCGugGGCGGCu -3' miRNA: 3'- -GGCAGAaa-----CGGCCa--UGCugUUGCUGu -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 51928 | 0.7 | 0.978965 |
Target: 5'- gCCGUCaaccUGuuGG-ACGACAcggACGACAg -3' miRNA: 3'- -GGCAGaa--ACggCCaUGCUGU---UGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 38404 | 0.69 | 0.988141 |
Target: 5'- uCCGUCUccgUGCCGcucgccGCuGGCGGCGACGu -3' miRNA: 3'- -GGCAGAa--ACGGCca----UG-CUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 88351 | 0.69 | 0.988286 |
Target: 5'- aCCGUCgccGCUGGcggcgcugccgcgagACGACGugGACGg -3' miRNA: 3'- -GGCAGaaaCGGCCa--------------UGCUGUugCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 152180 | 0.69 | 0.991922 |
Target: 5'- cCCGUCUUUcCCGGcgGCGaaaccgcgcGCAAgGACAa -3' miRNA: 3'- -GGCAGAAAcGGCCa-UGC---------UGUUgCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 112469 | 0.69 | 0.991922 |
Target: 5'- -aGUCUUcGuCCGaGgACGACGACGACGc -3' miRNA: 3'- ggCAGAAaC-GGC-CaUGCUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 67507 | 0.69 | 0.991922 |
Target: 5'- aCCGUCggUGCCGGcgGCcACGuccgucACGGCGu -3' miRNA: 3'- -GGCAGaaACGGCCa-UGcUGU------UGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 200982 | 0.69 | 0.991922 |
Target: 5'- gCCGUCUacGCC--UGCGACGugcGCGACGa -3' miRNA: 3'- -GGCAGAaaCGGccAUGCUGU---UGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 99533 | 0.69 | 0.992944 |
Target: 5'- gCGaUCUgcgGCCGGgucgcGCGGCAGUGACAg -3' miRNA: 3'- gGC-AGAaa-CGGCCa----UGCUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 5994 | 0.68 | 0.994677 |
Target: 5'- -gGUCUaaGCCGG-AUGACAACGGg- -3' miRNA: 3'- ggCAGAaaCGGCCaUGCUGUUGCUgu -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 197546 | 0.68 | 0.996049 |
Target: 5'- aCCGcagCgugGCCGGcgugGCGGcCGACGGCAg -3' miRNA: 3'- -GGCa--GaaaCGGCCa---UGCU-GUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 1732 | 0.68 | 0.996049 |
Target: 5'- gCCGgcgguggGCCGGcACGACggUGGCGc -3' miRNA: 3'- -GGCagaaa--CGGCCaUGCUGuuGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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