Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1641 | 3' | -50.6 | NC_001347.2 | + | 66779 | 0.67 | 0.998262 |
Target: 5'- aCGUCc--GCCcgacGGUggugGCGGCGGCGGCAg -3' miRNA: 3'- gGCAGaaaCGG----CCA----UGCUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 181732 | 0.67 | 0.997553 |
Target: 5'- cCCGUCcugcgaccGCUGcGUGCGcCGACGGCGu -3' miRNA: 3'- -GGCAGaaa-----CGGC-CAUGCuGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 182296 | 0.67 | 0.997553 |
Target: 5'- gCGUCgUUGCCGGgGCGGCuGCucCAg -3' miRNA: 3'- gGCAGaAACGGCCaUGCUGuUGcuGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 155265 | 0.67 | 0.997553 |
Target: 5'- cCUGUCguugcggacUGCacaaGGUaGCGGCGGCGACGg -3' miRNA: 3'- -GGCAGaa-------ACGg---CCA-UGCUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 76987 | 0.67 | 0.997553 |
Target: 5'- cCCG-CcgUGCCGGUgACGAgCAGCGcGCGg -3' miRNA: 3'- -GGCaGaaACGGCCA-UGCU-GUUGC-UGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 112634 | 0.67 | 0.997116 |
Target: 5'- gCCGaCgguaauagGCCGGUGauggUGGCGGCGGCAc -3' miRNA: 3'- -GGCaGaaa-----CGGCCAU----GCUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 174206 | 0.68 | 0.996617 |
Target: 5'- --uUCUUgacugGCCGG-ACGGCAGCGuCAc -3' miRNA: 3'- ggcAGAAa----CGGCCaUGCUGUUGCuGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 1732 | 0.68 | 0.996049 |
Target: 5'- gCCGgcgguggGCCGGcACGACggUGGCGc -3' miRNA: 3'- -GGCagaaa--CGGCCaUGCUGuuGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 197546 | 0.68 | 0.996049 |
Target: 5'- aCCGcagCgugGCCGGcgugGCGGcCGACGGCAg -3' miRNA: 3'- -GGCa--GaaaCGGCCa---UGCU-GUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 5994 | 0.68 | 0.994677 |
Target: 5'- -gGUCUaaGCCGG-AUGACAACGGg- -3' miRNA: 3'- ggCAGAaaCGGCCaUGCUGUUGCUgu -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 99533 | 0.69 | 0.992944 |
Target: 5'- gCGaUCUgcgGCCGGgucgcGCGGCAGUGACAg -3' miRNA: 3'- gGC-AGAaa-CGGCCa----UGCUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 152180 | 0.69 | 0.991922 |
Target: 5'- cCCGUCUUUcCCGGcgGCGaaaccgcgcGCAAgGACAa -3' miRNA: 3'- -GGCAGAAAcGGCCa-UGC---------UGUUgCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 112469 | 0.69 | 0.991922 |
Target: 5'- -aGUCUUcGuCCGaGgACGACGACGACGc -3' miRNA: 3'- ggCAGAAaC-GGC-CaUGCUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 67507 | 0.69 | 0.991922 |
Target: 5'- aCCGUCggUGCCGGcgGCcACGuccgucACGGCGu -3' miRNA: 3'- -GGCAGaaACGGCCa-UGcUGU------UGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 200982 | 0.69 | 0.991922 |
Target: 5'- gCCGUCUacGCC--UGCGACGugcGCGACGa -3' miRNA: 3'- -GGCAGAaaCGGccAUGCUGU---UGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 88351 | 0.69 | 0.988286 |
Target: 5'- aCCGUCgccGCUGGcggcgcugccgcgagACGACGugGACGg -3' miRNA: 3'- -GGCAGaaaCGGCCa--------------UGCUGUugCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 38404 | 0.69 | 0.988141 |
Target: 5'- uCCGUCUccgUGCCGcucgccGCuGGCGGCGACGu -3' miRNA: 3'- -GGCAGAa--ACGGCca----UG-CUGUUGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 184940 | 0.7 | 0.978965 |
Target: 5'- gCCGUCUgcagcucGUCGGccgGCGugGGCGGCu -3' miRNA: 3'- -GGCAGAaa-----CGGCCa--UGCugUUGCUGu -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 51928 | 0.7 | 0.978965 |
Target: 5'- gCCGUCaaccUGuuGG-ACGACAcggACGACAg -3' miRNA: 3'- -GGCAGaa--ACggCCaUGCUGU---UGCUGU- -5' |
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1641 | 3' | -50.6 | NC_001347.2 | + | 106363 | 0.71 | 0.974104 |
Target: 5'- gCGUC---GCCaGUAcCGACGACGACAg -3' miRNA: 3'- gGCAGaaaCGGcCAU-GCUGUUGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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