miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1641 3' -50.6 NC_001347.2 + 1732 0.68 0.996049
Target:  5'- gCCGgcgguggGCCGGcACGACggUGGCGc -3'
miRNA:   3'- -GGCagaaa--CGGCCaUGCUGuuGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 5994 0.68 0.994677
Target:  5'- -gGUCUaaGCCGG-AUGACAACGGg- -3'
miRNA:   3'- ggCAGAaaCGGCCaUGCUGUUGCUgu -5'
1641 3' -50.6 NC_001347.2 + 8207 0.72 0.946496
Target:  5'- -------aGCCGGUAgGACAGCGGCGc -3'
miRNA:   3'- ggcagaaaCGGCCAUgCUGUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 17132 0.72 0.96338
Target:  5'- gCCGUCg--GCCGccgcccaugccacGCGACGACGACGa -3'
miRNA:   3'- -GGCAGaaaCGGCca-----------UGCUGUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 24290 0.66 0.999553
Target:  5'- aUCGUgUUUcGgCGGcuguuCGACAGCGGCAa -3'
miRNA:   3'- -GGCAgAAA-CgGCCau---GCUGUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 27806 0.66 0.999437
Target:  5'- aCCGUCUUUGCCGccuucagauccucGUAUuGCGAaggUGGCGg -3'
miRNA:   3'- -GGCAGAAACGGC-------------CAUGcUGUU---GCUGU- -5'
1641 3' -50.6 NC_001347.2 + 38404 0.69 0.988141
Target:  5'- uCCGUCUccgUGCCGcucgccGCuGGCGGCGACGu -3'
miRNA:   3'- -GGCAGAa--ACGGCca----UG-CUGUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 51928 0.7 0.978965
Target:  5'- gCCGUCaaccUGuuGG-ACGACAcggACGACAg -3'
miRNA:   3'- -GGCAGaa--ACggCCaUGCUGU---UGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 66779 0.67 0.998262
Target:  5'- aCGUCc--GCCcgacGGUggugGCGGCGGCGGCAg -3'
miRNA:   3'- gGCAGaaaCGG----CCA----UGCUGUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 67507 0.69 0.991922
Target:  5'- aCCGUCggUGCCGGcgGCcACGuccgucACGGCGu -3'
miRNA:   3'- -GGCAGaaACGGCCa-UGcUGU------UGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 74947 0.66 0.99879
Target:  5'- aCGUCUgcGCCGG--CGACAcauGCGAa- -3'
miRNA:   3'- gGCAGAaaCGGCCauGCUGU---UGCUgu -5'
1641 3' -50.6 NC_001347.2 + 75411 0.66 0.999323
Target:  5'- gCGgCg--GCCGuGgcgGCGGCAGCGGCGc -3'
miRNA:   3'- gGCaGaaaCGGC-Ca--UGCUGUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 76987 0.67 0.997553
Target:  5'- cCCG-CcgUGCCGGUgACGAgCAGCGcGCGg -3'
miRNA:   3'- -GGCaGaaACGGCCA-UGCU-GUUGC-UGU- -5'
1641 3' -50.6 NC_001347.2 + 88150 0.67 0.998546
Target:  5'- aCGUCg--GCacagcggGGUGCGGgcCAGCGACAc -3'
miRNA:   3'- gGCAGaaaCGg------CCAUGCU--GUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 88351 0.69 0.988286
Target:  5'- aCCGUCgccGCUGGcggcgcugccgcgagACGACGugGACGg -3'
miRNA:   3'- -GGCAGaaaCGGCCa--------------UGCUGUugCUGU- -5'
1641 3' -50.6 NC_001347.2 + 95429 0.72 0.950716
Target:  5'- gCGgCUgugGCgGGUcGCGACGACGACAc -3'
miRNA:   3'- gGCaGAaa-CGgCCA-UGCUGUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 97900 0.66 0.999158
Target:  5'- gUCGUCUUcggcGUCGGgcgGCGGCGguaacacACGGCGa -3'
miRNA:   3'- -GGCAGAAa---CGGCCa--UGCUGU-------UGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 99533 0.69 0.992944
Target:  5'- gCGaUCUgcgGCCGGgucgcGCGGCAGUGACAg -3'
miRNA:   3'- gGC-AGAaa-CGGCCa----UGCUGUUGCUGU- -5'
1641 3' -50.6 NC_001347.2 + 102792 0.74 0.904292
Target:  5'- cCUGUCgacgUGCUGGUacACGGCAACGuCGa -3'
miRNA:   3'- -GGCAGaa--ACGGCCA--UGCUGUUGCuGU- -5'
1641 3' -50.6 NC_001347.2 + 105071 0.66 0.999174
Target:  5'- gCCGUCcggUGaggaGG-ACGGCGACGACc -3'
miRNA:   3'- -GGCAGaa-ACgg--CCaUGCUGUUGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.