miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1641 5' -59.3 NC_001347.2 + 159458 0.66 0.873591
Target:  5'- cCGCgGCCGCucgaugacgaUGUCGGCGcGGCGGCuGCu -3'
miRNA:   3'- -GUG-CGGUG----------ACGGCCGC-CUGUUGuCGc -5'
1641 5' -59.3 NC_001347.2 + 36704 0.66 0.873591
Target:  5'- gCACGCCGagGCCcaguGGCGG-CAGCAGg- -3'
miRNA:   3'- -GUGCGGUgaCGG----CCGCCuGUUGUCgc -5'
1641 5' -59.3 NC_001347.2 + 193099 0.66 0.873591
Target:  5'- -uCGCaaggGCUGCuCGGCGG-CcACGGCGu -3'
miRNA:   3'- guGCGg---UGACG-GCCGCCuGuUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 2397 0.66 0.873591
Target:  5'- -cCGCCGCcgagGCCGcGCGG-CGGCuGCu -3'
miRNA:   3'- guGCGGUGa---CGGC-CGCCuGUUGuCGc -5'
1641 5' -59.3 NC_001347.2 + 138956 0.66 0.873591
Target:  5'- cCGCGCUAgcGCCGGUGGGgcCcGCGGCu -3'
miRNA:   3'- -GUGCGGUgaCGGCCGCCU--GuUGUCGc -5'
1641 5' -59.3 NC_001347.2 + 106222 0.66 0.873591
Target:  5'- --gGCCACgaGCCaGaCGaGGCGGCGGCGg -3'
miRNA:   3'- gugCGGUGa-CGGcC-GC-CUGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 199614 0.66 0.873591
Target:  5'- -uCGCCACcgccGCCGGCgccguucucGGGCAGCgagGGCa -3'
miRNA:   3'- guGCGGUGa---CGGCCG---------CCUGUUG---UCGc -5'
1641 5' -59.3 NC_001347.2 + 169978 0.66 0.873591
Target:  5'- gGgGCCGCUGcCCGGgGGugACAAggaAGCGu -3'
miRNA:   3'- gUgCGGUGAC-GGCCgCC--UGUUg--UCGC- -5'
1641 5' -59.3 NC_001347.2 + 85307 0.66 0.866559
Target:  5'- -uCGCCcggGCUGCCccgcaGGUGGugAuCAGCGc -3'
miRNA:   3'- guGCGG---UGACGG-----CCGCCugUuGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 109273 0.66 0.866559
Target:  5'- -uUGCUGCUGCaGcGCGGGCcucaguACAGCGa -3'
miRNA:   3'- guGCGGUGACGgC-CGCCUGu-----UGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 228722 0.66 0.866559
Target:  5'- -uCGCCACcGCCgcGGCGGAUuuCcGCGc -3'
miRNA:   3'- guGCGGUGaCGG--CCGCCUGuuGuCGC- -5'
1641 5' -59.3 NC_001347.2 + 196143 0.66 0.866559
Target:  5'- -cCGCUGcCUGCCGGCGGcCcuguGCcGCGg -3'
miRNA:   3'- guGCGGU-GACGGCCGCCuGu---UGuCGC- -5'
1641 5' -59.3 NC_001347.2 + 100945 0.66 0.866559
Target:  5'- uCACGCCGCcGCCGcGaUGGAgAACuggucGGCGc -3'
miRNA:   3'- -GUGCGGUGaCGGC-C-GCCUgUUG-----UCGC- -5'
1641 5' -59.3 NC_001347.2 + 86009 0.66 0.866559
Target:  5'- -cCGCCGCggcGcCCGGCaGACAGCcGCu -3'
miRNA:   3'- guGCGGUGa--C-GGCCGcCUGUUGuCGc -5'
1641 5' -59.3 NC_001347.2 + 38668 0.66 0.851926
Target:  5'- aGCGCCACcgucgUGCCGGCccaccgccGGC-GCAGCu -3'
miRNA:   3'- gUGCGGUG-----ACGGCCGc-------CUGuUGUCGc -5'
1641 5' -59.3 NC_001347.2 + 8183 0.66 0.851175
Target:  5'- gGgGCCgggacggggugggACgagaGCCGGUaGGACAGCGGCGc -3'
miRNA:   3'- gUgCGG-------------UGa---CGGCCG-CCUGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 172919 0.66 0.849667
Target:  5'- cCACGCCGCUGCUGGguaauuucauguacCuGACuucCAGCa -3'
miRNA:   3'- -GUGCGGUGACGGCC--------------GcCUGuu-GUCGc -5'
1641 5' -59.3 NC_001347.2 + 101555 0.66 0.847392
Target:  5'- aACGCCACa-CUGGCGcGACAGgcacugaaccgcaucCAGCGa -3'
miRNA:   3'- gUGCGGUGacGGCCGC-CUGUU---------------GUCGC- -5'
1641 5' -59.3 NC_001347.2 + 196446 0.66 0.847392
Target:  5'- -cCGCCACcucacgGCCGGCG-ACGuggcccgcguccaggACAGCGu -3'
miRNA:   3'- guGCGGUGa-----CGGCCGCcUGU---------------UGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 66778 0.66 0.844335
Target:  5'- gACGuCCGCccgacgguggUGgCGGCGG-CGGCAGUGg -3'
miRNA:   3'- gUGC-GGUG----------ACgGCCGCCuGUUGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.