miRNA display CGI


Results 1 - 20 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1641 5' -59.3 NC_001347.2 + 130419 1.09 0.002324
Target:  5'- cCACGCCACUGCCGGCGGACAACAGCGg -3'
miRNA:   3'- -GUGCGGUGACGGCCGCCUGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 1953 0.79 0.214401
Target:  5'- uGCGCgGCgggGCCGGCgacggGGACGGCGGCGg -3'
miRNA:   3'- gUGCGgUGa--CGGCCG-----CCUGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 128286 0.78 0.264482
Target:  5'- gGCGCCACUGCCGcugcgauuuccgacaCGGACuuGCAGCGg -3'
miRNA:   3'- gUGCGGUGACGGCc--------------GCCUGu-UGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 158092 0.77 0.276068
Target:  5'- aGCGCCgcGCUGCgCGGCGGccucauCGGCAGCGu -3'
miRNA:   3'- gUGCGG--UGACG-GCCGCCu-----GUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 193450 0.77 0.288055
Target:  5'- gCACGCCAcCUGCCGGUaccagguguucguGGACGcguACGGCGc -3'
miRNA:   3'- -GUGCGGU-GACGGCCG-------------CCUGU---UGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 173574 0.77 0.308485
Target:  5'- gCugGCCAaUGCCGGCGGucugcaugACGACGGCc -3'
miRNA:   3'- -GugCGGUgACGGCCGCC--------UGUUGUCGc -5'
1641 5' -59.3 NC_001347.2 + 164742 0.76 0.351116
Target:  5'- gGCGCUGgUGuuGGCaGGCAACGGCGg -3'
miRNA:   3'- gUGCGGUgACggCCGcCUGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 156641 0.75 0.384941
Target:  5'- gGCGCCGCUGCCGGgccuCGGccgccgccgccacccAUGGCGGCGg -3'
miRNA:   3'- gUGCGGUGACGGCC----GCC---------------UGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 174998 0.75 0.397765
Target:  5'- gCGgGCCG-UGCCGGUGGagucGCAGCAGCGc -3'
miRNA:   3'- -GUgCGGUgACGGCCGCC----UGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 165625 0.75 0.397765
Target:  5'- gGCaGCCGCccGCCGGCGGGCAGCuucuuuuGCa -3'
miRNA:   3'- gUG-CGGUGa-CGGCCGCCUGUUGu------CGc -5'
1641 5' -59.3 NC_001347.2 + 144431 0.74 0.422535
Target:  5'- gACGuCCGCUGCCagauggcacGGgGGGCGACGGCc -3'
miRNA:   3'- gUGC-GGUGACGG---------CCgCCUGUUGUCGc -5'
1641 5' -59.3 NC_001347.2 + 113043 0.74 0.448208
Target:  5'- gACGCCGCcucUGCCGGCuccgagGGagaaaGCGACGGCGg -3'
miRNA:   3'- gUGCGGUG---ACGGCCG------CC-----UGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 143147 0.73 0.465795
Target:  5'- cCAUGUCuCUgGCCGGCgccagaccGGACGACAGCGu -3'
miRNA:   3'- -GUGCGGuGA-CGGCCG--------CCUGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 1273 0.73 0.465795
Target:  5'- gCACGCUGCUGCCGcuCGGACGGCcGUa -3'
miRNA:   3'- -GUGCGGUGACGGCc-GCCUGUUGuCGc -5'
1641 5' -59.3 NC_001347.2 + 174190 0.73 0.474722
Target:  5'- aGCGCCAgccuuagcuuucUUGaCUGGcCGGACGGCAGCGu -3'
miRNA:   3'- gUGCGGU------------GAC-GGCC-GCCUGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 38306 0.73 0.483734
Target:  5'- uCGCGCCcCcGCCGGCGGcgccguACGGCuGCGg -3'
miRNA:   3'- -GUGCGGuGaCGGCCGCC------UGUUGuCGC- -5'
1641 5' -59.3 NC_001347.2 + 117427 0.72 0.511242
Target:  5'- -uCGCCACggaGuCCGGCGGAUcGCGGCc -3'
miRNA:   3'- guGCGGUGa--C-GGCCGCCUGuUGUCGc -5'
1641 5' -59.3 NC_001347.2 + 143025 0.72 0.520557
Target:  5'- uGCGCCGCaagCGGCGG-CAACAGCu -3'
miRNA:   3'- gUGCGGUGacgGCCGCCuGUUGUCGc -5'
1641 5' -59.3 NC_001347.2 + 106023 0.72 0.543171
Target:  5'- uCGCGCgGCUGUCGGCGcuuuucgucaugcuGCGACAGCu -3'
miRNA:   3'- -GUGCGgUGACGGCCGCc-------------UGUUGUCGc -5'
1641 5' -59.3 NC_001347.2 + 162157 0.72 0.558426
Target:  5'- aCGgGCUGCUggaaGUCGGCGGGCGGgGGCGu -3'
miRNA:   3'- -GUgCGGUGA----CGGCCGCCUGUUgUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.