miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1641 5' -59.3 NC_001347.2 + 152439 0.66 0.844335
Target:  5'- gGgGCCGCaGCCguuGGUGGaaacuacguGCAACGGCGa -3'
miRNA:   3'- gUgCGGUGaCGG---CCGCC---------UGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 66778 0.66 0.844335
Target:  5'- gACGuCCGCccgacgguggUGgCGGCGG-CGGCAGUGg -3'
miRNA:   3'- gUGC-GGUG----------ACgGCCGCCuGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 152999 0.66 0.844335
Target:  5'- gGCGUCGgaGgCGGUGGGCAGgAuGCGg -3'
miRNA:   3'- gUGCGGUgaCgGCCGCCUGUUgU-CGC- -5'
1641 5' -59.3 NC_001347.2 + 75937 0.66 0.843566
Target:  5'- gCGCGCCAaguuCUGgCGGaaccagagcucgaCGGGCuGCGGCGa -3'
miRNA:   3'- -GUGCGGU----GACgGCC-------------GCCUGuUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 94837 0.66 0.836569
Target:  5'- aCACGCCGCUGagcaCGGCGcugaugauguuGACGucguccaguGCGGCc -3'
miRNA:   3'- -GUGCGGUGACg---GCCGC-----------CUGU---------UGUCGc -5'
1641 5' -59.3 NC_001347.2 + 188464 0.66 0.836569
Target:  5'- gGCGCCGCUaGUggUGGCGGuguuuccaGCAuuuuCAGCGg -3'
miRNA:   3'- gUGCGGUGA-CG--GCCGCC--------UGUu---GUCGC- -5'
1641 5' -59.3 NC_001347.2 + 198076 0.66 0.836569
Target:  5'- ---cCCGCUGUcgCGGCGGucGCGACGGUGa -3'
miRNA:   3'- gugcGGUGACG--GCCGCC--UGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 200110 0.66 0.836569
Target:  5'- aGgGCCgGCU-CCGGCGGGCAaaccgaagauACAGCc -3'
miRNA:   3'- gUgCGG-UGAcGGCCGCCUGU----------UGUCGc -5'
1641 5' -59.3 NC_001347.2 + 80858 0.67 0.828633
Target:  5'- cCACGCCACUaccaccGCCgccgcuagaauGGCGGugAgugacgacGCAGCc -3'
miRNA:   3'- -GUGCGGUGA------CGG-----------CCGCCugU--------UGUCGc -5'
1641 5' -59.3 NC_001347.2 + 157273 0.67 0.828633
Target:  5'- uGCGgCGCagacGUCGGCGGuccucCAGCAGCa -3'
miRNA:   3'- gUGCgGUGa---CGGCCGCCu----GUUGUCGc -5'
1641 5' -59.3 NC_001347.2 + 139453 0.67 0.828633
Target:  5'- -gUGCgACUGCaCGGCGGcgaGGCGGUGc -3'
miRNA:   3'- guGCGgUGACG-GCCGCCug-UUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 2182 0.67 0.828633
Target:  5'- gGCGCCGacgGUgaUGGUGGGuuCGACAGCGa -3'
miRNA:   3'- gUGCGGUga-CG--GCCGCCU--GUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 170112 0.67 0.828633
Target:  5'- gCACGCCgucuguGCUGUCGuugacGCGuGACAGCGGUc -3'
miRNA:   3'- -GUGCGG------UGACGGC-----CGC-CUGUUGUCGc -5'
1641 5' -59.3 NC_001347.2 + 105646 0.67 0.828633
Target:  5'- cCAUGCCACUGgCGcUGGAaauCAAcCAGCGa -3'
miRNA:   3'- -GUGCGGUGACgGCcGCCU---GUU-GUCGC- -5'
1641 5' -59.3 NC_001347.2 + 168252 0.67 0.828633
Target:  5'- uGCGUgAUcacCCGGCGGAcCAGCGGCu -3'
miRNA:   3'- gUGCGgUGac-GGCCGCCU-GUUGUCGc -5'
1641 5' -59.3 NC_001347.2 + 179657 0.67 0.828633
Target:  5'- --gGCCACaGCUacguguuGCGGGCAAUAGCGc -3'
miRNA:   3'- gugCGGUGaCGGc------CGCCUGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 88240 0.67 0.827831
Target:  5'- gGgGUCGCUGCCGcCGGugAagagagcGCGGCGu -3'
miRNA:   3'- gUgCGGUGACGGCcGCCugU-------UGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 153848 0.67 0.821353
Target:  5'- gCGCGCCACguccucgugugccgcGCCGaGCGG-CGACGuGCa -3'
miRNA:   3'- -GUGCGGUGa--------------CGGC-CGCCuGUUGU-CGc -5'
1641 5' -59.3 NC_001347.2 + 139365 0.67 0.820536
Target:  5'- gACGaCugUGCacgugguGGUGGGCAACGGCu -3'
miRNA:   3'- gUGCgGugACGg------CCGCCUGUUGUCGc -5'
1641 5' -59.3 NC_001347.2 + 56396 0.67 0.820536
Target:  5'- uGCGgUGCUGUuaaCGGUGGAgGGCAGUGu -3'
miRNA:   3'- gUGCgGUGACG---GCCGCCUgUUGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.