miRNA display CGI


Results 1 - 20 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1641 5' -59.3 NC_001347.2 + 1273 0.73 0.465795
Target:  5'- gCACGCUGCUGCCGcuCGGACGGCcGUa -3'
miRNA:   3'- -GUGCGGUGACGGCc-GCCUGUUGuCGc -5'
1641 5' -59.3 NC_001347.2 + 1712 0.7 0.665235
Target:  5'- gGCGCUcggacgggaGCUgcGCCGGCGGugGGcCGGCa -3'
miRNA:   3'- gUGCGG---------UGA--CGGCCGCCugUU-GUCGc -5'
1641 5' -59.3 NC_001347.2 + 1953 0.79 0.214401
Target:  5'- uGCGCgGCgggGCCGGCgacggGGACGGCGGCGg -3'
miRNA:   3'- gUGCGgUGa--CGGCCG-----CCUGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 2009 0.67 0.791015
Target:  5'- aGCGgCACggagacggaggccGCCGGCGGggacgcgccgugcGCGAUAGCGg -3'
miRNA:   3'- gUGCgGUGa------------CGGCCGCC-------------UGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 2098 0.67 0.812283
Target:  5'- gUACGgCGCcGCCGGCGGgggcGCGAUuuGCGu -3'
miRNA:   3'- -GUGCgGUGaCGGCCGCC----UGUUGu-CGC- -5'
1641 5' -59.3 NC_001347.2 + 2142 0.7 0.626252
Target:  5'- aCGCGCaCGCggugGUCggGGCGGACGcgGCAGCa -3'
miRNA:   3'- -GUGCG-GUGa---CGG--CCGCCUGU--UGUCGc -5'
1641 5' -59.3 NC_001347.2 + 2182 0.67 0.828633
Target:  5'- gGCGCCGacgGUgaUGGUGGGuuCGACAGCGa -3'
miRNA:   3'- gUGCGGUga-CG--GCCGCCU--GUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 2279 0.67 0.819717
Target:  5'- gGCGCCguguucggguACUGCCcgcuGGaCGGGCAcguguacccgcugGCGGCGg -3'
miRNA:   3'- gUGCGG----------UGACGG----CC-GCCUGU-------------UGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 2397 0.66 0.873591
Target:  5'- -cCGCCGCcgagGCCGcGCGG-CGGCuGCu -3'
miRNA:   3'- guGCGGUGa---CGGC-CGCCuGUUGuCGc -5'
1641 5' -59.3 NC_001347.2 + 8183 0.66 0.851175
Target:  5'- gGgGCCgggacggggugggACgagaGCCGGUaGGACAGCGGCGc -3'
miRNA:   3'- gUgCGG-------------UGa---CGGCCG-CCUGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 8231 0.69 0.713356
Target:  5'- cCACGCCGCcGUgGGCGGugAuaacCAGUu -3'
miRNA:   3'- -GUGCGGUGaCGgCCGCCugUu---GUCGc -5'
1641 5' -59.3 NC_001347.2 + 22203 0.71 0.597032
Target:  5'- uCGCaGCCACgcGCUGGUGGccgaACAGCAGCu -3'
miRNA:   3'- -GUG-CGGUGa-CGGCCGCC----UGUUGUCGc -5'
1641 5' -59.3 NC_001347.2 + 22905 0.68 0.741536
Target:  5'- gUACGCCGagaaacaCGGCGGACGcaucgACGGCGu -3'
miRNA:   3'- -GUGCGGUgacg---GCCGCCUGU-----UGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 36704 0.66 0.873591
Target:  5'- gCACGCCGagGCCcaguGGCGG-CAGCAGg- -3'
miRNA:   3'- -GUGCGGUgaCGG----CCGCCuGUUGUCgc -5'
1641 5' -59.3 NC_001347.2 + 36781 0.67 0.803881
Target:  5'- aCGCGCUACguaGCCGGUcgcGGACcGCGGa- -3'
miRNA:   3'- -GUGCGGUGa--CGGCCG---CCUGuUGUCgc -5'
1641 5' -59.3 NC_001347.2 + 38306 0.73 0.483734
Target:  5'- uCGCGCCcCcGCCGGCGGcgccguACGGCuGCGg -3'
miRNA:   3'- -GUGCGGuGaCGGCCGCC------UGUUGuCGC- -5'
1641 5' -59.3 NC_001347.2 + 38668 0.66 0.851926
Target:  5'- aGCGCCACcgucgUGCCGGCccaccgccGGC-GCAGCu -3'
miRNA:   3'- gUGCGGUG-----ACGGCCGc-------CUGuUGUCGc -5'
1641 5' -59.3 NC_001347.2 + 38740 0.71 0.58733
Target:  5'- aACGUCugUcggagcGCCGGCuGaGGCAGCAGCGu -3'
miRNA:   3'- gUGCGGugA------CGGCCG-C-CUGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 47114 0.68 0.777857
Target:  5'- aCAUGCCGaugguaugGgCGGCGGcggcaauggccGCGGCAGCGg -3'
miRNA:   3'- -GUGCGGUga------CgGCCGCC-----------UGUUGUCGC- -5'
1641 5' -59.3 NC_001347.2 + 56396 0.67 0.820536
Target:  5'- uGCGgUGCUGUuaaCGGUGGAgGGCAGUGu -3'
miRNA:   3'- gUGCgGUGACG---GCCGCCUgUUGUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.