miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16411 3' -48.3 NC_004084.1 + 49622 0.66 0.984215
Target:  5'- --aCGGAGaucUCGUCGCCGG-GCu-CCg -3'
miRNA:   3'- uuaGCUUCa--AGCAGUGGCUaCGuuGG- -5'
16411 3' -48.3 NC_004084.1 + 52842 0.66 0.984215
Target:  5'- -cUCGgcGUUCGgCGCUG--GCGACCu -3'
miRNA:   3'- uuAGCuuCAAGCaGUGGCuaCGUUGG- -5'
16411 3' -48.3 NC_004084.1 + 27956 0.66 0.984215
Target:  5'- uGGUCGggGUUCaccCACCaGAcGCGugCg -3'
miRNA:   3'- -UUAGCuuCAAGca-GUGG-CUaCGUugG- -5'
16411 3' -48.3 NC_004084.1 + 54160 0.66 0.984215
Target:  5'- cGUCGAAGggCGagaagCAaCGAgGCGACCa -3'
miRNA:   3'- uUAGCUUCaaGCa----GUgGCUaCGUUGG- -5'
16411 3' -48.3 NC_004084.1 + 42120 0.66 0.984215
Target:  5'- -uUCGAcGUucUCGUCGaggCGAUGCAcgagcACCg -3'
miRNA:   3'- uuAGCUuCA--AGCAGUg--GCUACGU-----UGG- -5'
16411 3' -48.3 NC_004084.1 + 35933 0.66 0.984215
Target:  5'- --aCGAGcauGUccccggCGUCGCCGGggucgGCGGCCg -3'
miRNA:   3'- uuaGCUU---CAa-----GCAGUGGCUa----CGUUGG- -5'
16411 3' -48.3 NC_004084.1 + 51163 0.66 0.982061
Target:  5'- cGAUCGAGacg-GUCGCCGA-GCAcgcGCCg -3'
miRNA:   3'- -UUAGCUUcaagCAGUGGCUaCGU---UGG- -5'
16411 3' -48.3 NC_004084.1 + 37196 0.66 0.982061
Target:  5'- --aCGAug-UCGUCACCGGcuucGCcGCCg -3'
miRNA:   3'- uuaGCUucaAGCAGUGGCUa---CGuUGG- -5'
16411 3' -48.3 NC_004084.1 + 6942 0.66 0.982061
Target:  5'- gAGUCGAuGgaaccggUCGUCGCCcGUaCAGCCg -3'
miRNA:   3'- -UUAGCUuCa------AGCAGUGGcUAcGUUGG- -5'
16411 3' -48.3 NC_004084.1 + 42684 0.66 0.977101
Target:  5'- gGcgCGAGGcugccagCGaUCACCGAUGCugacGACCc -3'
miRNA:   3'- -UuaGCUUCaa-----GC-AGUGGCUACG----UUGG- -5'
16411 3' -48.3 NC_004084.1 + 50235 0.66 0.977101
Target:  5'- -cUCGAacgAGUccucugcguccUCGUCGCCGuugGCGGCg -3'
miRNA:   3'- uuAGCU---UCA-----------AGCAGUGGCua-CGUUGg -5'
16411 3' -48.3 NC_004084.1 + 50042 0.66 0.977101
Target:  5'- aAGUCGAAGaugcUCGUCccucACCGGgugGCGAUUg -3'
miRNA:   3'- -UUAGCUUCa---AGCAG----UGGCUa--CGUUGG- -5'
16411 3' -48.3 NC_004084.1 + 16715 0.66 0.976829
Target:  5'- aGGUCGAAGaccgggacgCGcUCGCCGGUcugcaucGCGGCCu -3'
miRNA:   3'- -UUAGCUUCaa-------GC-AGUGGCUA-------CGUUGG- -5'
16411 3' -48.3 NC_004084.1 + 12673 0.66 0.973977
Target:  5'- cGAUCGAgcggacuGGUUCGUaGCCGAccaGC-ACCg -3'
miRNA:   3'- -UUAGCU-------UCAAGCAgUGGCUa--CGuUGG- -5'
16411 3' -48.3 NC_004084.1 + 50984 0.67 0.9712
Target:  5'- --cCGAGGUcUCGcCACCGucgGCAucGCCc -3'
miRNA:   3'- uuaGCUUCA-AGCaGUGGCua-CGU--UGG- -5'
16411 3' -48.3 NC_004084.1 + 45606 0.67 0.9712
Target:  5'- -cUCGAAGUacaaCGUC-CCGGcUGaCAACCu -3'
miRNA:   3'- uuAGCUUCAa---GCAGuGGCU-AC-GUUGG- -5'
16411 3' -48.3 NC_004084.1 + 23331 0.67 0.970555
Target:  5'- -uUCGAGGauaUCGUCAaguccuacucgaCGAUgGCGACCg -3'
miRNA:   3'- uuAGCUUCa--AGCAGUg-----------GCUA-CGUUGG- -5'
16411 3' -48.3 NC_004084.1 + 50600 0.67 0.967871
Target:  5'- -cUCGAggcAGUUCGugcguacggguUCGCCGAcgcUGCGGCg -3'
miRNA:   3'- uuAGCU---UCAAGC-----------AGUGGCU---ACGUUGg -5'
16411 3' -48.3 NC_004084.1 + 55772 0.67 0.964278
Target:  5'- --aCGAGG--CGUCA-CGAUGCAACUu -3'
miRNA:   3'- uuaGCUUCaaGCAGUgGCUACGUUGG- -5'
16411 3' -48.3 NC_004084.1 + 38525 0.67 0.964278
Target:  5'- -uUCGAAGUUCcuGUucuaCACCGGcgGCAccGCCg -3'
miRNA:   3'- uuAGCUUCAAG--CA----GUGGCUa-CGU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.