miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16411 5' -55 NC_004084.1 + 41098 0.65 0.792797
Target:  5'- cGGGCCGUCgccgCGGGA-GAggaggUUGAUg -3'
miRNA:   3'- aCCUGGCAGa---GCCCUgCUaga--AGCUG- -5'
16411 5' -55 NC_004084.1 + 12456 0.66 0.773195
Target:  5'- aGGAgCCGaCUCGGacacauCGuUCUUCGACa -3'
miRNA:   3'- aCCU-GGCaGAGCCcu----GCuAGAAGCUG- -5'
16411 5' -55 NC_004084.1 + 31322 0.66 0.773195
Target:  5'- cUGGAuCCGgCUCGGGAucCGGagcaguUCgucgUCGACg -3'
miRNA:   3'- -ACCU-GGCaGAGCCCU--GCU------AGa---AGCUG- -5'
16411 5' -55 NC_004084.1 + 8691 0.66 0.773195
Target:  5'- gUGGACCGaggaCUCGGGGaguUCUgcaagaaccuccUCGGCg -3'
miRNA:   3'- -ACCUGGCa---GAGCCCUgcuAGA------------AGCUG- -5'
16411 5' -55 NC_004084.1 + 8612 0.66 0.773195
Target:  5'- cGaGGCUGUcCUCGaGGcCGAUCUggccgUCGACu -3'
miRNA:   3'- aC-CUGGCA-GAGC-CCuGCUAGA-----AGCUG- -5'
16411 5' -55 NC_004084.1 + 54473 0.66 0.752003
Target:  5'- cGGAUCGUCUUcacggcgGGGAUGAUg-UCGGg -3'
miRNA:   3'- aCCUGGCAGAG-------CCCUGCUAgaAGCUg -5'
16411 5' -55 NC_004084.1 + 49638 0.66 0.742754
Target:  5'- gUGGACCuG-CUCGagcuguGGGCGGUggUCGACa -3'
miRNA:   3'- -ACCUGG-CaGAGC------CCUGCUAgaAGCUG- -5'
16411 5' -55 NC_004084.1 + 27167 0.67 0.711329
Target:  5'- -cGACCGcggugagaaUCUCaGGACGAUCg-CGACg -3'
miRNA:   3'- acCUGGC---------AGAGcCCUGCUAGaaGCUG- -5'
16411 5' -55 NC_004084.1 + 56651 0.67 0.711329
Target:  5'- gGGACUGg--CGGGACGAaCUggGGCc -3'
miRNA:   3'- aCCUGGCagaGCCCUGCUaGAagCUG- -5'
16411 5' -55 NC_004084.1 + 10991 0.67 0.700688
Target:  5'- cGGAUCGUCUUGucgccGACGucCUUCGGCu -3'
miRNA:   3'- aCCUGGCAGAGCc----CUGCuaGAAGCUG- -5'
16411 5' -55 NC_004084.1 + 23003 0.68 0.68353
Target:  5'- uUGGAUgcgcgcucucaacaaCGcUCUCGGGAaGGUCgUCGACg -3'
miRNA:   3'- -ACCUG---------------GC-AGAGCCCUgCUAGaAGCUG- -5'
16411 5' -55 NC_004084.1 + 5352 0.68 0.657577
Target:  5'- cGGGCgG-CgaggacUGGGACGAUC-UCGACg -3'
miRNA:   3'- aCCUGgCaGa-----GCCCUGCUAGaAGCUG- -5'
16411 5' -55 NC_004084.1 + 22923 0.68 0.646715
Target:  5'- cGcGACCGUUggUCGGGaucucgGCGAUCgccccUCGACc -3'
miRNA:   3'- aC-CUGGCAG--AGCCC------UGCUAGa----AGCUG- -5'
16411 5' -55 NC_004084.1 + 23157 0.68 0.635841
Target:  5'- aGGACUuccccCUCGGGACGGaguUCUUCGu- -3'
miRNA:   3'- aCCUGGca---GAGCCCUGCU---AGAAGCug -5'
16411 5' -55 NC_004084.1 + 51585 0.68 0.623876
Target:  5'- -uGACCGUCuUCGaGGACGAaCUcaacgauaugacgUCGACg -3'
miRNA:   3'- acCUGGCAG-AGC-CCUGCUaGA-------------AGCUG- -5'
16411 5' -55 NC_004084.1 + 42325 0.69 0.603237
Target:  5'- -cGACCG--UCGGGACGAga-UCGACg -3'
miRNA:   3'- acCUGGCagAGCCCUGCUagaAGCUG- -5'
16411 5' -55 NC_004084.1 + 21635 0.69 0.603237
Target:  5'- uUGGACCGcCagCGGGGCGAacc-CGACu -3'
miRNA:   3'- -ACCUGGCaGa-GCCCUGCUagaaGCUG- -5'
16411 5' -55 NC_004084.1 + 56434 0.69 0.570848
Target:  5'- cGGcACCGUCgCGaacGACGAUC-UCGACg -3'
miRNA:   3'- aCC-UGGCAGaGCc--CUGCUAGaAGCUG- -5'
16411 5' -55 NC_004084.1 + 21386 0.7 0.538897
Target:  5'- cGGugCcagCUCGGGcAUGAUCcggUCGACg -3'
miRNA:   3'- aCCugGca-GAGCCC-UGCUAGa--AGCUG- -5'
16411 5' -55 NC_004084.1 + 53137 0.71 0.487133
Target:  5'- cGGACCaUCcgcugCGGGACG-UCgUCGACg -3'
miRNA:   3'- aCCUGGcAGa----GCCCUGCuAGaAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.