miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16418 3' -57.2 NC_004084.1 + 34721 0.66 0.66419
Target:  5'- cGGGcgUCGCCGGuuCGCgaugagCUCGCGgACCa -3'
miRNA:   3'- cUCCa-AGUGGCU--GCGa-----GGGCGUgUGG- -5'
16418 3' -57.2 NC_004084.1 + 14348 0.66 0.653455
Target:  5'- cGAGGUaCugCGAggUGCUacgcggcaucUUCGCGCACCu -3'
miRNA:   3'- -CUCCAaGugGCU--GCGA----------GGGCGUGUGG- -5'
16418 3' -57.2 NC_004084.1 + 57993 0.66 0.642702
Target:  5'- cGAGG-UCGCCguaGACGCUCUCGauCAUCu -3'
miRNA:   3'- -CUCCaAGUGG---CUGCGAGGGCguGUGG- -5'
16418 3' -57.2 NC_004084.1 + 47598 0.66 0.611498
Target:  5'- cGAGGUucgugucgaucucgUCACCGAugacaucaggagccUGCUgacuugcguacgcaCCCGCugGCCc -3'
miRNA:   3'- -CUCCA--------------AGUGGCU--------------GCGA--------------GGGCGugUGG- -5'
16418 3' -57.2 NC_004084.1 + 48972 0.66 0.610424
Target:  5'- -----cCGCCGACuacgGCgUCCCGCAgCACCg -3'
miRNA:   3'- cuccaaGUGGCUG----CG-AGGGCGU-GUGG- -5'
16418 3' -57.2 NC_004084.1 + 27215 0.66 0.610424
Target:  5'- cGAGGUUCGCgaCGACGUcgaCGCGCugUu -3'
miRNA:   3'- -CUCCAAGUG--GCUGCGaggGCGUGugG- -5'
16418 3' -57.2 NC_004084.1 + 1838 0.67 0.578306
Target:  5'- --cGUUCACggUGugGCUCCUGCAgCGCg -3'
miRNA:   3'- cucCAAGUG--GCugCGAGGGCGU-GUGg -5'
16418 3' -57.2 NC_004084.1 + 29682 0.67 0.578306
Target:  5'- gGGGGUUCG-CGACGCggUCgCGgACGCUg -3'
miRNA:   3'- -CUCCAAGUgGCUGCG--AGgGCgUGUGG- -5'
16418 3' -57.2 NC_004084.1 + 54561 0.67 0.578306
Target:  5'- cGGGGUUggaCACCGAgGUUCCgGUggaGCCg -3'
miRNA:   3'- -CUCCAA---GUGGCUgCGAGGgCGug-UGG- -5'
16418 3' -57.2 NC_004084.1 + 19757 0.67 0.578306
Target:  5'- cGGGUacUACCGAgGCUCCCGacgaauaAgACCg -3'
miRNA:   3'- cUCCAa-GUGGCUgCGAGGGCg------UgUGG- -5'
16418 3' -57.2 NC_004084.1 + 2302 0.67 0.554983
Target:  5'- cGGGUcuggucgugcUCGCCGGagaucuuguugaGCUCCUGC-CGCCa -3'
miRNA:   3'- cUCCA----------AGUGGCUg-----------CGAGGGCGuGUGG- -5'
16418 3' -57.2 NC_004084.1 + 30956 0.68 0.536109
Target:  5'- cGAGGa-CGCCGAcCGuCUCCCGCu--CCg -3'
miRNA:   3'- -CUCCaaGUGGCU-GC-GAGGGCGuguGG- -5'
16418 3' -57.2 NC_004084.1 + 30294 0.68 0.536109
Target:  5'- cGAGGacgUCAUUGACGCgCUCGUcgaggcGCACCc -3'
miRNA:   3'- -CUCCa--AGUGGCUGCGaGGGCG------UGUGG- -5'
16418 3' -57.2 NC_004084.1 + 32208 0.68 0.52572
Target:  5'- aGAGGagCGCCucgaGAUGCUCCuCGacgACGCCg -3'
miRNA:   3'- -CUCCaaGUGG----CUGCGAGG-GCg--UGUGG- -5'
16418 3' -57.2 NC_004084.1 + 29927 0.68 0.515407
Target:  5'- -----aCACCGGCGUugUCCUGCuCACCa -3'
miRNA:   3'- cuccaaGUGGCUGCG--AGGGCGuGUGG- -5'
16418 3' -57.2 NC_004084.1 + 7368 0.69 0.484989
Target:  5'- -cGGUUCGcuCCGACGgugaUCCCGC-CugCg -3'
miRNA:   3'- cuCCAAGU--GGCUGCg---AGGGCGuGugG- -5'
16418 3' -57.2 NC_004084.1 + 14617 0.69 0.455454
Target:  5'- ----cUC-CCGGCGCUCCuCGC-CGCCg -3'
miRNA:   3'- cuccaAGuGGCUGCGAGG-GCGuGUGG- -5'
16418 3' -57.2 NC_004084.1 + 41157 0.69 0.455454
Target:  5'- cGAGGgcaUCGCCGACuGCaccggccgcagaUCCUGCugcuuCACCg -3'
miRNA:   3'- -CUCCa--AGUGGCUG-CG------------AGGGCGu----GUGG- -5'
16418 3' -57.2 NC_004084.1 + 16665 0.69 0.436313
Target:  5'- gGAGGUccucgUCGCCGGCGUcgUCCCGaucguCAUCc -3'
miRNA:   3'- -CUCCA-----AGUGGCUGCG--AGGGCgu---GUGG- -5'
16418 3' -57.2 NC_004084.1 + 39925 0.7 0.426918
Target:  5'- aGAGGccUCGCUGAgGUUCCaCGUcgACACCu -3'
miRNA:   3'- -CUCCa-AGUGGCUgCGAGG-GCG--UGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.