Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16418 | 3' | -57.2 | NC_004084.1 | + | 47598 | 0.66 | 0.611498 |
Target: 5'- cGAGGUucgugucgaucucgUCACCGAugacaucaggagccUGCUgacuugcguacgcaCCCGCugGCCc -3' miRNA: 3'- -CUCCA--------------AGUGGCU--------------GCGA--------------GGGCGugUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 48545 | 0.72 | 0.316536 |
Target: 5'- -cGG-UCGCCGACucuuccgccggGCUCCCGCGugaGCCg -3' miRNA: 3'- cuCCaAGUGGCUG-----------CGAGGGCGUg--UGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 48972 | 0.66 | 0.610424 |
Target: 5'- -----cCGCCGACuacgGCgUCCCGCAgCACCg -3' miRNA: 3'- cuccaaGUGGCUG----CG-AGGGCGU-GUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 50620 | 0.76 | 0.176482 |
Target: 5'- cGGGUUCGCCGACGCUgCgGCGgggaagaACCa -3' miRNA: 3'- cUCCAAGUGGCUGCGAgGgCGUg------UGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 54561 | 0.67 | 0.578306 |
Target: 5'- cGGGGUUggaCACCGAgGUUCCgGUggaGCCg -3' miRNA: 3'- -CUCCAA---GUGGCUgCGAGGgCGug-UGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 57993 | 0.66 | 0.642702 |
Target: 5'- cGAGG-UCGCCguaGACGCUCUCGauCAUCu -3' miRNA: 3'- -CUCCaAGUGG---CUGCGAGGGCguGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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