Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16418 | 3' | -57.2 | NC_004084.1 | + | 24167 | 1.11 | 0.000558 |
Target: 5'- gGAGGUUCACCGACGCUCCCGCACACCu -3' miRNA: 3'- -CUCCAAGUGGCUGCGAGGGCGUGUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 34721 | 0.66 | 0.66419 |
Target: 5'- cGGGcgUCGCCGGuuCGCgaugagCUCGCGgACCa -3' miRNA: 3'- cUCCa-AGUGGCU--GCGa-----GGGCGUgUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 48972 | 0.66 | 0.610424 |
Target: 5'- -----cCGCCGACuacgGCgUCCCGCAgCACCg -3' miRNA: 3'- cuccaaGUGGCUG----CG-AGGGCGU-GUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 29682 | 0.67 | 0.578306 |
Target: 5'- gGGGGUUCG-CGACGCggUCgCGgACGCUg -3' miRNA: 3'- -CUCCAAGUgGCUGCG--AGgGCgUGUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 19757 | 0.67 | 0.578306 |
Target: 5'- cGGGUacUACCGAgGCUCCCGacgaauaAgACCg -3' miRNA: 3'- cUCCAa-GUGGCUgCGAGGGCg------UgUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 1838 | 0.67 | 0.578306 |
Target: 5'- --cGUUCACggUGugGCUCCUGCAgCGCg -3' miRNA: 3'- cucCAAGUG--GCugCGAGGGCGU-GUGg -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 32208 | 0.68 | 0.52572 |
Target: 5'- aGAGGagCGCCucgaGAUGCUCCuCGacgACGCCg -3' miRNA: 3'- -CUCCaaGUGG----CUGCGAGG-GCg--UGUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 25469 | 0.7 | 0.417643 |
Target: 5'- cGAGGUUCGCgGGCgGCgUCagaaggUGCGCGCCg -3' miRNA: 3'- -CUCCAAGUGgCUG-CG-AGg-----GCGUGUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 27960 | 0.7 | 0.390573 |
Target: 5'- cGGGGUUCACCcaccaGACGCgUgCGUucGCACCg -3' miRNA: 3'- -CUCCAAGUGG-----CUGCGaGgGCG--UGUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 35333 | 0.71 | 0.348081 |
Target: 5'- cGAGG-UCGCCGACGUccaccUCgUCGCGuCGCCg -3' miRNA: 3'- -CUCCaAGUGGCUGCG-----AG-GGCGU-GUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 50620 | 0.76 | 0.176482 |
Target: 5'- cGGGUUCGCCGACGCUgCgGCGgggaagaACCa -3' miRNA: 3'- cUCCAAGUGGCUGCGAgGgCGUg------UGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 29927 | 0.68 | 0.515407 |
Target: 5'- -----aCACCGGCGUugUCCUGCuCACCa -3' miRNA: 3'- cuccaaGUGGCUGCG--AGGGCGuGUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 30294 | 0.68 | 0.536109 |
Target: 5'- cGAGGacgUCAUUGACGCgCUCGUcgaggcGCACCc -3' miRNA: 3'- -CUCCa--AGUGGCUGCGaGGGCG------UGUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 30956 | 0.68 | 0.536109 |
Target: 5'- cGAGGa-CGCCGAcCGuCUCCCGCu--CCg -3' miRNA: 3'- -CUCCaaGUGGCU-GC-GAGGGCGuguGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 2302 | 0.67 | 0.554983 |
Target: 5'- cGGGUcuggucgugcUCGCCGGagaucuuguugaGCUCCUGC-CGCCa -3' miRNA: 3'- cUCCA----------AGUGGCUg-----------CGAGGGCGuGUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 54561 | 0.67 | 0.578306 |
Target: 5'- cGGGGUUggaCACCGAgGUUCCgGUggaGCCg -3' miRNA: 3'- -CUCCAA---GUGGCUgCGAGGgCGug-UGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 27215 | 0.66 | 0.610424 |
Target: 5'- cGAGGUUCGCgaCGACGUcgaCGCGCugUu -3' miRNA: 3'- -CUCCAAGUG--GCUGCGaggGCGUGugG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 47598 | 0.66 | 0.611498 |
Target: 5'- cGAGGUucgugucgaucucgUCACCGAugacaucaggagccUGCUgacuugcguacgcaCCCGCugGCCc -3' miRNA: 3'- -CUCCA--------------AGUGGCU--------------GCGA--------------GGGCGugUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 57993 | 0.66 | 0.642702 |
Target: 5'- cGAGG-UCGCCguaGACGCUCUCGauCAUCu -3' miRNA: 3'- -CUCCaAGUGG---CUGCGAGGGCguGUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 48545 | 0.72 | 0.316536 |
Target: 5'- -cGG-UCGCCGACucuuccgccggGCUCCCGCGugaGCCg -3' miRNA: 3'- cuCCaAGUGGCUG-----------CGAGGGCGUg--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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