Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16418 | 3' | -57.2 | NC_004084.1 | + | 1838 | 0.67 | 0.578306 |
Target: 5'- --cGUUCACggUGugGCUCCUGCAgCGCg -3' miRNA: 3'- cucCAAGUG--GCugCGAGGGCGU-GUGg -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 19757 | 0.67 | 0.578306 |
Target: 5'- cGGGUacUACCGAgGCUCCCGacgaauaAgACCg -3' miRNA: 3'- cUCCAa-GUGGCUgCGAGGGCg------UgUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 29682 | 0.67 | 0.578306 |
Target: 5'- gGGGGUUCG-CGACGCggUCgCGgACGCUg -3' miRNA: 3'- -CUCCAAGUgGCUGCG--AGgGCgUGUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 48972 | 0.66 | 0.610424 |
Target: 5'- -----cCGCCGACuacgGCgUCCCGCAgCACCg -3' miRNA: 3'- cuccaaGUGGCUG----CG-AGGGCGU-GUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 34721 | 0.66 | 0.66419 |
Target: 5'- cGGGcgUCGCCGGuuCGCgaugagCUCGCGgACCa -3' miRNA: 3'- cUCCa-AGUGGCU--GCGa-----GGGCGUgUGG- -5' |
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16418 | 3' | -57.2 | NC_004084.1 | + | 24167 | 1.11 | 0.000558 |
Target: 5'- gGAGGUUCACCGACGCUCCCGCACACCu -3' miRNA: 3'- -CUCCAAGUGGCUGCGAGGGCGUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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