Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16418 | 5' | -55.1 | NC_004084.1 | + | 58218 | 0.66 | 0.754502 |
Target: 5'- uGGCCGUgCGGGcucccggaacGUCuUCUGGGACc- -3' miRNA: 3'- gUCGGCAaGUCC----------UAGcAGACCCUGug -5' |
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16418 | 5' | -55.1 | NC_004084.1 | + | 17449 | 0.66 | 0.754502 |
Target: 5'- gGGuUCGUcCGGGAUCGUCgacGGGAUcaACu -3' miRNA: 3'- gUC-GGCAaGUCCUAGCAGa--CCCUG--UG- -5' |
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16418 | 5' | -55.1 | NC_004084.1 | + | 25033 | 0.66 | 0.733629 |
Target: 5'- gCAGCCGUUgCAcGGAgcgCGUgUGGGuAgACu -3' miRNA: 3'- -GUCGGCAA-GU-CCUa--GCAgACCC-UgUG- -5' |
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16418 | 5' | -55.1 | NC_004084.1 | + | 43754 | 0.66 | 0.712348 |
Target: 5'- cCGGCCGggacgcucgCGGGcAUCGaCUGGG-CGCu -3' miRNA: 3'- -GUCGGCaa-------GUCC-UAGCaGACCCuGUG- -5' |
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16418 | 5' | -55.1 | NC_004084.1 | + | 57217 | 0.68 | 0.591998 |
Target: 5'- cCAGCCagcGUUCAGGAUCGagccgUUGGcGAaCACc -3' miRNA: 3'- -GUCGG---CAAGUCCUAGCa----GACC-CU-GUG- -5' |
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16418 | 5' | -55.1 | NC_004084.1 | + | 29716 | 0.71 | 0.445462 |
Target: 5'- gCGGCCGUUCgAGGAgaUCGUCcGGG-CGa -3' miRNA: 3'- -GUCGGCAAG-UCCU--AGCAGaCCCuGUg -5' |
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16418 | 5' | -55.1 | NC_004084.1 | + | 24201 | 1.1 | 0.000865 |
Target: 5'- aCAGCCGUUCAGGAUCGUCUGGGACACa -3' miRNA: 3'- -GUCGGCAAGUCCUAGCAGACCCUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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