miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1642 3' -58.3 NC_001347.2 + 34640 0.66 0.914293
Target:  5'- cGGugUUGGuGCUcGCgAUCCUGG-CCGUCu -3'
miRNA:   3'- -CCugGACC-CGA-CG-UAGGACCuGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 39906 0.66 0.914293
Target:  5'- -aACUUGGaGUUGCGUUgUGGACgGCg -3'
miRNA:   3'- ccUGGACC-CGACGUAGgACCUGgUGg -5'
1642 3' -58.3 NC_001347.2 + 143502 0.66 0.913733
Target:  5'- cGGACC-GGGCgGCcuucuaccguaccGUCCuccguuUGGAUCGCUg -3'
miRNA:   3'- -CCUGGaCCCGaCG-------------UAGG------ACCUGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 126318 0.66 0.908589
Target:  5'- aGGGCCaGGuGCUGCugaCCaUGGccuACUACCu -3'
miRNA:   3'- -CCUGGaCC-CGACGua-GG-ACC---UGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 77312 0.66 0.908589
Target:  5'- uGGGCgUGGGCcGCggCgUGGAUgACg -3'
miRNA:   3'- -CCUGgACCCGaCGuaGgACCUGgUGg -5'
1642 3' -58.3 NC_001347.2 + 184489 0.66 0.907422
Target:  5'- cGGCCUcGGGCggcccggccgccGCGccgugugagaguUCCaGGGCCGCCg -3'
miRNA:   3'- cCUGGA-CCCGa-----------CGU------------AGGaCCUGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 110224 0.66 0.902669
Target:  5'- uGGaaGCC-GGucguCUGCGacUCCUGGACCugCg -3'
miRNA:   3'- -CC--UGGaCCc---GACGU--AGGACCUGGugG- -5'
1642 3' -58.3 NC_001347.2 + 2406 0.66 0.902669
Target:  5'- aGGCCgcgcgGcGGCUGCugcccgagCUGGACCGCg -3'
miRNA:   3'- cCUGGa----C-CCGACGuag-----GACCUGGUGg -5'
1642 3' -58.3 NC_001347.2 + 18607 0.66 0.899015
Target:  5'- cGGCCUGGuGCUGCucgacaaguuuggCgUGGuCUACCu -3'
miRNA:   3'- cCUGGACC-CGACGua-----------GgACCuGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 200289 0.66 0.896536
Target:  5'- cGGCCUGGGCUGU---CUGGAa-GCUu -3'
miRNA:   3'- cCUGGACCCGACGuagGACCUggUGG- -5'
1642 3' -58.3 NC_001347.2 + 201646 0.66 0.890194
Target:  5'- -uACCUGGGCgccucggGCG-CCauguaccugUGGACCgACCa -3'
miRNA:   3'- ccUGGACCCGa------CGUaGG---------ACCUGG-UGG- -5'
1642 3' -58.3 NC_001347.2 + 189877 0.66 0.890194
Target:  5'- gGGucGCCUGuccGGCaGCAgCC-GGGCCGCCu -3'
miRNA:   3'- -CC--UGGAC---CCGaCGUaGGaCCUGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 30592 0.66 0.883643
Target:  5'- -cGCC-GGGCgGCuUCCUGcGGCCgGCCg -3'
miRNA:   3'- ccUGGaCCCGaCGuAGGAC-CUGG-UGG- -5'
1642 3' -58.3 NC_001347.2 + 35624 0.67 0.87689
Target:  5'- -aGCCUGGG-UGgGUCuUUGGACCuCCa -3'
miRNA:   3'- ccUGGACCCgACgUAG-GACCUGGuGG- -5'
1642 3' -58.3 NC_001347.2 + 78403 0.67 0.869937
Target:  5'- cGGGCCacgucGGGCUGCugCCgccGCCACCc -3'
miRNA:   3'- -CCUGGa----CCCGACGuaGGaccUGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 135690 0.67 0.869937
Target:  5'- gGGAgCUGGGUgggGgAUCCccGGucgcCCACCg -3'
miRNA:   3'- -CCUgGACCCGa--CgUAGGa-CCu---GGUGG- -5'
1642 3' -58.3 NC_001347.2 + 196067 0.67 0.869937
Target:  5'- uGACCgaGGaGCUGUAccugcgCCUGGACggCACCc -3'
miRNA:   3'- cCUGGa-CC-CGACGUa-----GGACCUG--GUGG- -5'
1642 3' -58.3 NC_001347.2 + 13531 0.67 0.862789
Target:  5'- cGGCCcGGGCcGcCGUgCUGGaggGCCGCCc -3'
miRNA:   3'- cCUGGaCCCGaC-GUAgGACC---UGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 162457 0.67 0.855452
Target:  5'- aGGGCCU--GCUGCGUCUcaUGGAUCAg- -3'
miRNA:   3'- -CCUGGAccCGACGUAGG--ACCUGGUgg -5'
1642 3' -58.3 NC_001347.2 + 21693 0.67 0.839449
Target:  5'- gGGGCCUcgcuuuuGGGUUGCgAUCCUGGcgcgucucuccgGCgGCUg -3'
miRNA:   3'- -CCUGGA-------CCCGACG-UAGGACC------------UGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.