miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1642 3' -58.3 NC_001347.2 + 129941 1.14 0.001401
Target:  5'- uGGACCUGGGCUGCAUCCUGGACCACCa -3'
miRNA:   3'- -CCUGGACCCGACGUAGGACCUGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 169152 0.81 0.206026
Target:  5'- uGGACCUGGGCccGCAUCugCUGcACCGCCg -3'
miRNA:   3'- -CCUGGACCCGa-CGUAG--GACcUGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 26715 0.77 0.324679
Target:  5'- cGugUucgUGGGCUGCAUCCUGG-CCGuCCu -3'
miRNA:   3'- cCugG---ACCCGACGUAGGACCuGGU-GG- -5'
1642 3' -58.3 NC_001347.2 + 169188 0.76 0.392653
Target:  5'- aGACgCUGGGCUGCGUCaagaccgucucgCUGGGCauCACCu -3'
miRNA:   3'- cCUG-GACCCGACGUAG------------GACCUG--GUGG- -5'
1642 3' -58.3 NC_001347.2 + 183977 0.74 0.496407
Target:  5'- cGGGCCcgaugGGGCUcGCgAUCCuUGGGCCAUg -3'
miRNA:   3'- -CCUGGa----CCCGA-CG-UAGG-ACCUGGUGg -5'
1642 3' -58.3 NC_001347.2 + 77579 0.73 0.513986
Target:  5'- aGGACCUGGaGCaGUAUCUguuggugUGGAgCGCCu -3'
miRNA:   3'- -CCUGGACC-CGaCGUAGG-------ACCUgGUGG- -5'
1642 3' -58.3 NC_001347.2 + 6388 0.73 0.552727
Target:  5'- -aACCcGGGcCUGCca-CUGGACCGCCa -3'
miRNA:   3'- ccUGGaCCC-GACGuagGACCUGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 105619 0.71 0.6694
Target:  5'- gGGAgCUGGuGCUGC--CCUGGAUCguACCc -3'
miRNA:   3'- -CCUgGACC-CGACGuaGGACCUGG--UGG- -5'
1642 3' -58.3 NC_001347.2 + 31416 0.7 0.698419
Target:  5'- cGGCCUGGGCUGC-UgUUGGGuaaCGCUg -3'
miRNA:   3'- cCUGGACCCGACGuAgGACCUg--GUGG- -5'
1642 3' -58.3 NC_001347.2 + 14018 0.7 0.706089
Target:  5'- cGGCCgGGGCUGUgaaCCgcucaguggcucGGACCGCCg -3'
miRNA:   3'- cCUGGaCCCGACGua-GGa-----------CCUGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 92452 0.7 0.717523
Target:  5'- aGGAUacgCUuGGCUuCAUCCUGGGgCACCa -3'
miRNA:   3'- -CCUG---GAcCCGAcGUAGGACCUgGUGG- -5'
1642 3' -58.3 NC_001347.2 + 59479 0.69 0.745661
Target:  5'- -cGCCUGGGCaccaugUGCAaCCUGGcCCucuCCa -3'
miRNA:   3'- ccUGGACCCG------ACGUaGGACCuGGu--GG- -5'
1642 3' -58.3 NC_001347.2 + 62918 0.69 0.754869
Target:  5'- gGGAUCUcGGGCccUGCggCCaUGGAUCACa -3'
miRNA:   3'- -CCUGGA-CCCG--ACGuaGG-ACCUGGUGg -5'
1642 3' -58.3 NC_001347.2 + 181695 0.69 0.755784
Target:  5'- aGGACCccgagaccuacaUGGGCUuccucugggauauccCGUCCUGcGACCGCUg -3'
miRNA:   3'- -CCUGG------------ACCCGAc--------------GUAGGAC-CUGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 18445 0.69 0.763978
Target:  5'- ---gCUGGGCUcCAUCgaGGGCCugCg -3'
miRNA:   3'- ccugGACCCGAcGUAGgaCCUGGugG- -5'
1642 3' -58.3 NC_001347.2 + 176772 0.69 0.77655
Target:  5'- aGACCUGGGCcauguacacuguggGCAUUCUGG-CC-CUg -3'
miRNA:   3'- cCUGGACCCGa-------------CGUAGGACCuGGuGG- -5'
1642 3' -58.3 NC_001347.2 + 109664 0.68 0.790634
Target:  5'- cGcCCUGgcaGGCcgGCAUCCUGGcCCGCa -3'
miRNA:   3'- cCuGGAC---CCGa-CGUAGGACCuGGUGg -5'
1642 3' -58.3 NC_001347.2 + 15593 0.68 0.816117
Target:  5'- cGGGCCcGcGGCUGCAUugCCUGGugACgACg -3'
miRNA:   3'- -CCUGGaC-CCGACGUA--GGACC--UGgUGg -5'
1642 3' -58.3 NC_001347.2 + 183762 0.68 0.829961
Target:  5'- uGGGCCacGGGCUuuaccuucauaaaaGCGUugcgcaCCUGGAaguCCACCa -3'
miRNA:   3'- -CCUGGa-CCCGA--------------CGUA------GGACCU---GGUGG- -5'
1642 3' -58.3 NC_001347.2 + 147351 0.68 0.832356
Target:  5'- uGGGCCUGGccaGCUGCGU----GACCAUCa -3'
miRNA:   3'- -CCUGGACC---CGACGUAggacCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.