Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1642 | 3' | -58.3 | NC_001347.2 | + | 147351 | 0.68 | 0.832356 |
Target: 5'- uGGGCCUGGccaGCUGCGU----GACCAUCa -3' miRNA: 3'- -CCUGGACC---CGACGUAggacCUGGUGG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 107792 | 0.68 | 0.832356 |
Target: 5'- cGGugCUGGGC-GCuUCCaucgcgcuggaGGACCugCu -3' miRNA: 3'- -CCugGACCCGaCGuAGGa----------CCUGGugG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 183762 | 0.68 | 0.829961 |
Target: 5'- uGGGCCacGGGCUuuaccuucauaaaaGCGUugcgcaCCUGGAaguCCACCa -3' miRNA: 3'- -CCUGGa-CCCGA--------------CGUA------GGACCU---GGUGG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 15593 | 0.68 | 0.816117 |
Target: 5'- cGGGCCcGcGGCUGCAUugCCUGGugACgACg -3' miRNA: 3'- -CCUGGaC-CCGACGUA--GGACC--UGgUGg -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 109664 | 0.68 | 0.790634 |
Target: 5'- cGcCCUGgcaGGCcgGCAUCCUGGcCCGCa -3' miRNA: 3'- cCuGGAC---CCGa-CGUAGGACCuGGUGg -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 176772 | 0.69 | 0.77655 |
Target: 5'- aGACCUGGGCcauguacacuguggGCAUUCUGG-CC-CUg -3' miRNA: 3'- cCUGGACCCGa-------------CGUAGGACCuGGuGG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 18445 | 0.69 | 0.763978 |
Target: 5'- ---gCUGGGCUcCAUCgaGGGCCugCg -3' miRNA: 3'- ccugGACCCGAcGUAGgaCCUGGugG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 181695 | 0.69 | 0.755784 |
Target: 5'- aGGACCccgagaccuacaUGGGCUuccucugggauauccCGUCCUGcGACCGCUg -3' miRNA: 3'- -CCUGG------------ACCCGAc--------------GUAGGAC-CUGGUGG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 62918 | 0.69 | 0.754869 |
Target: 5'- gGGAUCUcGGGCccUGCggCCaUGGAUCACa -3' miRNA: 3'- -CCUGGA-CCCG--ACGuaGG-ACCUGGUGg -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 59479 | 0.69 | 0.745661 |
Target: 5'- -cGCCUGGGCaccaugUGCAaCCUGGcCCucuCCa -3' miRNA: 3'- ccUGGACCCG------ACGUaGGACCuGGu--GG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 92452 | 0.7 | 0.717523 |
Target: 5'- aGGAUacgCUuGGCUuCAUCCUGGGgCACCa -3' miRNA: 3'- -CCUG---GAcCCGAcGUAGGACCUgGUGG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 14018 | 0.7 | 0.706089 |
Target: 5'- cGGCCgGGGCUGUgaaCCgcucaguggcucGGACCGCCg -3' miRNA: 3'- cCUGGaCCCGACGua-GGa-----------CCUGGUGG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 31416 | 0.7 | 0.698419 |
Target: 5'- cGGCCUGGGCUGC-UgUUGGGuaaCGCUg -3' miRNA: 3'- cCUGGACCCGACGuAgGACCUg--GUGG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 105619 | 0.71 | 0.6694 |
Target: 5'- gGGAgCUGGuGCUGC--CCUGGAUCguACCc -3' miRNA: 3'- -CCUgGACC-CGACGuaGGACCUGG--UGG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 6388 | 0.73 | 0.552727 |
Target: 5'- -aACCcGGGcCUGCca-CUGGACCGCCa -3' miRNA: 3'- ccUGGaCCC-GACGuagGACCUGGUGG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 77579 | 0.73 | 0.513986 |
Target: 5'- aGGACCUGGaGCaGUAUCUguuggugUGGAgCGCCu -3' miRNA: 3'- -CCUGGACC-CGaCGUAGG-------ACCUgGUGG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 183977 | 0.74 | 0.496407 |
Target: 5'- cGGGCCcgaugGGGCUcGCgAUCCuUGGGCCAUg -3' miRNA: 3'- -CCUGGa----CCCGA-CG-UAGG-ACCUGGUGg -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 169188 | 0.76 | 0.392653 |
Target: 5'- aGACgCUGGGCUGCGUCaagaccgucucgCUGGGCauCACCu -3' miRNA: 3'- cCUG-GACCCGACGUAG------------GACCUG--GUGG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 26715 | 0.77 | 0.324679 |
Target: 5'- cGugUucgUGGGCUGCAUCCUGG-CCGuCCu -3' miRNA: 3'- cCugG---ACCCGACGUAGGACCuGGU-GG- -5' |
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1642 | 3' | -58.3 | NC_001347.2 | + | 169152 | 0.81 | 0.206026 |
Target: 5'- uGGACCUGGGCccGCAUCugCUGcACCGCCg -3' miRNA: 3'- -CCUGGACCCGa-CGUAG--GACcUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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