miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1642 3' -58.3 NC_001347.2 + 2406 0.66 0.902669
Target:  5'- aGGCCgcgcgGcGGCUGCugcccgagCUGGACCGCg -3'
miRNA:   3'- cCUGGa----C-CCGACGuag-----GACCUGGUGg -5'
1642 3' -58.3 NC_001347.2 + 6388 0.73 0.552727
Target:  5'- -aACCcGGGcCUGCca-CUGGACCGCCa -3'
miRNA:   3'- ccUGGaCCC-GACGuagGACCUGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 13531 0.67 0.862789
Target:  5'- cGGCCcGGGCcGcCGUgCUGGaggGCCGCCc -3'
miRNA:   3'- cCUGGaCCCGaC-GUAgGACC---UGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 14018 0.7 0.706089
Target:  5'- cGGCCgGGGCUGUgaaCCgcucaguggcucGGACCGCCg -3'
miRNA:   3'- cCUGGaCCCGACGua-GGa-----------CCUGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 15593 0.68 0.816117
Target:  5'- cGGGCCcGcGGCUGCAUugCCUGGugACgACg -3'
miRNA:   3'- -CCUGGaC-CCGACGUA--GGACC--UGgUGg -5'
1642 3' -58.3 NC_001347.2 + 18445 0.69 0.763978
Target:  5'- ---gCUGGGCUcCAUCgaGGGCCugCg -3'
miRNA:   3'- ccugGACCCGAcGUAGgaCCUGGugG- -5'
1642 3' -58.3 NC_001347.2 + 18607 0.66 0.899015
Target:  5'- cGGCCUGGuGCUGCucgacaaguuuggCgUGGuCUACCu -3'
miRNA:   3'- cCUGGACC-CGACGua-----------GgACCuGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 21693 0.67 0.839449
Target:  5'- gGGGCCUcgcuuuuGGGUUGCgAUCCUGGcgcgucucuccgGCgGCUg -3'
miRNA:   3'- -CCUGGA-------CCCGACG-UAGGACC------------UGgUGG- -5'
1642 3' -58.3 NC_001347.2 + 26715 0.77 0.324679
Target:  5'- cGugUucgUGGGCUGCAUCCUGG-CCGuCCu -3'
miRNA:   3'- cCugG---ACCCGACGUAGGACCuGGU-GG- -5'
1642 3' -58.3 NC_001347.2 + 30592 0.66 0.883643
Target:  5'- -cGCC-GGGCgGCuUCCUGcGGCCgGCCg -3'
miRNA:   3'- ccUGGaCCCGaCGuAGGAC-CUGG-UGG- -5'
1642 3' -58.3 NC_001347.2 + 31416 0.7 0.698419
Target:  5'- cGGCCUGGGCUGC-UgUUGGGuaaCGCUg -3'
miRNA:   3'- cCUGGACCCGACGuAgGACCUg--GUGG- -5'
1642 3' -58.3 NC_001347.2 + 34640 0.66 0.914293
Target:  5'- cGGugUUGGuGCUcGCgAUCCUGG-CCGUCu -3'
miRNA:   3'- -CCugGACC-CGA-CG-UAGGACCuGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 35624 0.67 0.87689
Target:  5'- -aGCCUGGG-UGgGUCuUUGGACCuCCa -3'
miRNA:   3'- ccUGGACCCgACgUAG-GACCUGGuGG- -5'
1642 3' -58.3 NC_001347.2 + 39906 0.66 0.914293
Target:  5'- -aACUUGGaGUUGCGUUgUGGACgGCg -3'
miRNA:   3'- ccUGGACC-CGACGUAGgACCUGgUGg -5'
1642 3' -58.3 NC_001347.2 + 59479 0.69 0.745661
Target:  5'- -cGCCUGGGCaccaugUGCAaCCUGGcCCucuCCa -3'
miRNA:   3'- ccUGGACCCG------ACGUaGGACCuGGu--GG- -5'
1642 3' -58.3 NC_001347.2 + 62918 0.69 0.754869
Target:  5'- gGGAUCUcGGGCccUGCggCCaUGGAUCACa -3'
miRNA:   3'- -CCUGGA-CCCG--ACGuaGG-ACCUGGUGg -5'
1642 3' -58.3 NC_001347.2 + 77312 0.66 0.908589
Target:  5'- uGGGCgUGGGCcGCggCgUGGAUgACg -3'
miRNA:   3'- -CCUGgACCCGaCGuaGgACCUGgUGg -5'
1642 3' -58.3 NC_001347.2 + 77579 0.73 0.513986
Target:  5'- aGGACCUGGaGCaGUAUCUguuggugUGGAgCGCCu -3'
miRNA:   3'- -CCUGGACC-CGaCGUAGG-------ACCUgGUGG- -5'
1642 3' -58.3 NC_001347.2 + 78403 0.67 0.869937
Target:  5'- cGGGCCacgucGGGCUGCugCCgccGCCACCc -3'
miRNA:   3'- -CCUGGa----CCCGACGuaGGaccUGGUGG- -5'
1642 3' -58.3 NC_001347.2 + 92452 0.7 0.717523
Target:  5'- aGGAUacgCUuGGCUuCAUCCUGGGgCACCa -3'
miRNA:   3'- -CCUG---GAcCCGAcGUAGGACCUgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.