miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16421 5' -53.6 NC_004084.1 + 53281 0.66 0.844251
Target:  5'- cGACGUcgguCGCCACGCCgagguuguaucgacGGUCGgccaGCUGg -3'
miRNA:   3'- cCUGUAu---GUGGUGCGG--------------CCAGUg---UGAC- -5'
16421 5' -53.6 NC_004084.1 + 41191 0.66 0.83812
Target:  5'- gGGACGaACACgACGCCcGcgACGCUGg -3'
miRNA:   3'- -CCUGUaUGUGgUGCGGcCagUGUGAC- -5'
16421 5' -53.6 NC_004084.1 + 27144 0.66 0.83812
Target:  5'- -----aACGCgACGUCGGaCACGCUGa -3'
miRNA:   3'- ccuguaUGUGgUGCGGCCaGUGUGAC- -5'
16421 5' -53.6 NC_004084.1 + 28823 0.66 0.83812
Target:  5'- uGGGCGaGCAUCGCGaCCGGUU-CGCc- -3'
miRNA:   3'- -CCUGUaUGUGGUGC-GGCCAGuGUGac -5'
16421 5' -53.6 NC_004084.1 + 8133 0.66 0.829178
Target:  5'- uGACcgACGCCugGUCGG-CAgACg- -3'
miRNA:   3'- cCUGuaUGUGGugCGGCCaGUgUGac -5'
16421 5' -53.6 NC_004084.1 + 16138 0.66 0.820029
Target:  5'- -aACGggugACCGCGgUGGUCGCGCUGc -3'
miRNA:   3'- ccUGUaug-UGGUGCgGCCAGUGUGAC- -5'
16421 5' -53.6 NC_004084.1 + 29333 0.66 0.820029
Target:  5'- aGGACGUcccacGCGCUcucgaacucGCGCUGGUCgACGCc- -3'
miRNA:   3'- -CCUGUA-----UGUGG---------UGCGGCCAG-UGUGac -5'
16421 5' -53.6 NC_004084.1 + 54901 0.66 0.801145
Target:  5'- cGGGCAUcguCACCACuccaugauGCUGGcCAgCACUGu -3'
miRNA:   3'- -CCUGUAu--GUGGUG--------CGGCCaGU-GUGAC- -5'
16421 5' -53.6 NC_004084.1 + 39853 0.67 0.791431
Target:  5'- cGGCGgcCGCgGCGCCGucgagCACGCUGa -3'
miRNA:   3'- cCUGUauGUGgUGCGGCca---GUGUGAC- -5'
16421 5' -53.6 NC_004084.1 + 56999 0.67 0.791431
Target:  5'- aGGACGgcgACGCCgagaauggcgACGCCGGUgAUAaUGa -3'
miRNA:   3'- -CCUGUa--UGUGG----------UGCGGCCAgUGUgAC- -5'
16421 5' -53.6 NC_004084.1 + 55393 0.67 0.751023
Target:  5'- cGcCGUAuuCGCCACGUCGGggACGCUGu -3'
miRNA:   3'- cCuGUAU--GUGGUGCGGCCagUGUGAC- -5'
16421 5' -53.6 NC_004084.1 + 34454 0.68 0.740588
Target:  5'- cGGACGUACuuACCGCGUCcaUCGCGgUGu -3'
miRNA:   3'- -CCUGUAUG--UGGUGCGGccAGUGUgAC- -5'
16421 5' -53.6 NC_004084.1 + 34945 0.68 0.708673
Target:  5'- cGGGCGUucguGCGCUAgcgGCUGGUCGCgacGCUGg -3'
miRNA:   3'- -CCUGUA----UGUGGUg--CGGCCAGUG---UGAC- -5'
16421 5' -53.6 NC_004084.1 + 26654 0.69 0.643108
Target:  5'- cGGACGUACuuACCGCGUccaucgCGGUCugAgaGg -3'
miRNA:   3'- -CCUGUAUG--UGGUGCG------GCCAGugUgaC- -5'
16421 5' -53.6 NC_004084.1 + 29430 0.7 0.610045
Target:  5'- cGGuCAUcAgGCCgACGUCGGUCGCGCg- -3'
miRNA:   3'- -CCuGUA-UgUGG-UGCGGCCAGUGUGac -5'
16421 5' -53.6 NC_004084.1 + 48523 0.71 0.555437
Target:  5'- uGGACGUACGCCuucACGUcauCGGUCGCcgACUc -3'
miRNA:   3'- -CCUGUAUGUGG---UGCG---GCCAGUG--UGAc -5'
16421 5' -53.6 NC_004084.1 + 43304 0.71 0.544667
Target:  5'- cGGACGagcuucCACCGCuaCGGUCACACc- -3'
miRNA:   3'- -CCUGUau----GUGGUGcgGCCAGUGUGac -5'
16421 5' -53.6 NC_004084.1 + 44157 0.71 0.523341
Target:  5'- aGGACcucCACCugGucCCGGUCgACACUGu -3'
miRNA:   3'- -CCUGuauGUGGugC--GGCCAG-UGUGAC- -5'
16421 5' -53.6 NC_004084.1 + 28964 0.72 0.512798
Target:  5'- uGGGCAUcGCGcCCACGCCGcGUuCGCGgUGa -3'
miRNA:   3'- -CCUGUA-UGU-GGUGCGGC-CA-GUGUgAC- -5'
16421 5' -53.6 NC_004084.1 + 44337 0.73 0.441772
Target:  5'- cGACAUcgACGuCUACGUCGGUCGCGgUGa -3'
miRNA:   3'- cCUGUA--UGU-GGUGCGGCCAGUGUgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.