Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16422 | 3' | -54.8 | NC_004084.1 | + | 27838 | 0.66 | 0.800795 |
Target: 5'- cCGCGAgGUCaCGGACGAgCUGa-AGGa -3' miRNA: 3'- -GCGCUgCAGaGCCUGCUaGACggUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 45644 | 0.66 | 0.800795 |
Target: 5'- uCGaCGGCGUCUCGGA-----UGCCGAc -3' miRNA: 3'- -GC-GCUGCAGAGCCUgcuagACGGUUc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 46500 | 0.66 | 0.7912 |
Target: 5'- uCGCGACGUCgc---CGGUC-GCCGAGu -3' miRNA: 3'- -GCGCUGCAGagccuGCUAGaCGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 18563 | 0.66 | 0.7912 |
Target: 5'- gGcCGACGgggagaUCGcGACGGUCUGCUucGg -3' miRNA: 3'- gC-GCUGCag----AGC-CUGCUAGACGGuuC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 13988 | 0.66 | 0.790231 |
Target: 5'- aCGCGGCcgugcucGUCcguUCGGaACGggUUGCCGAGc -3' miRNA: 3'- -GCGCUG-------CAG---AGCC-UGCuaGACGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 14578 | 0.66 | 0.781443 |
Target: 5'- aGCGGCGUCgCGGAUG-UCUcgcGCCc-- -3' miRNA: 3'- gCGCUGCAGaGCCUGCuAGA---CGGuuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 27552 | 0.66 | 0.770536 |
Target: 5'- cCGCGcacaaggGCcUCcCGGACGGUC-GCCAGGa -3' miRNA: 3'- -GCGC-------UGcAGaGCCUGCUAGaCGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 5354 | 0.66 | 0.761485 |
Target: 5'- gGCGGCGaggaCUgGGACGAUCUcgacGUCGAa -3' miRNA: 3'- gCGCUGCa---GAgCCUGCUAGA----CGGUUc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 29345 | 0.66 | 0.761485 |
Target: 5'- gGCGACGaCgcccccgagCGGGCGGUCgcgGCCu-- -3' miRNA: 3'- gCGCUGCaGa--------GCCUGCUAGa--CGGuuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 1020 | 0.66 | 0.759459 |
Target: 5'- gGCGACGUCgacgcgaUCGGggGCGcgCUcgaguucGCCGAGg -3' miRNA: 3'- gCGCUGCAG-------AGCC--UGCuaGA-------CGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 23571 | 0.66 | 0.751306 |
Target: 5'- aGCGauGCGUCUCGuacGACGAcgucgugcUCcGCCGGGa -3' miRNA: 3'- gCGC--UGCAGAGC---CUGCU--------AGaCGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 56682 | 0.66 | 0.751306 |
Target: 5'- gGCGGCGggUCUCGGucacCGAUCgagcaGCCGc- -3' miRNA: 3'- gCGCUGC--AGAGCCu---GCUAGa----CGGUuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 39621 | 0.66 | 0.751306 |
Target: 5'- gGCGACGUcCUCGacgaguCGAUCguacgcgacGCCGAGg -3' miRNA: 3'- gCGCUGCA-GAGCcu----GCUAGa--------CGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 18090 | 0.67 | 0.741008 |
Target: 5'- uCGagGACGaUCUCGGACG-UCagGUCGAGg -3' miRNA: 3'- -GCg-CUGC-AGAGCCUGCuAGa-CGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 50271 | 0.67 | 0.741008 |
Target: 5'- gGCGAgGUcCUC-GACG-UCUGCCGAc -3' miRNA: 3'- gCGCUgCA-GAGcCUGCuAGACGGUUc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 56932 | 0.67 | 0.720102 |
Target: 5'- gGCGACGUCUaccaGGAggucguCGAUC-GCCGc- -3' miRNA: 3'- gCGCUGCAGAg---CCU------GCUAGaCGGUuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 21730 | 0.67 | 0.709515 |
Target: 5'- cCGCGACGUCaUCgcaguccuccuGGAcauCGAUgCUGCCGAu -3' miRNA: 3'- -GCGCUGCAG-AG-----------CCU---GCUA-GACGGUUc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 50132 | 0.67 | 0.709515 |
Target: 5'- cCGCGAuCGUC-CGGAUGAcgaggucgUUGUCGAGg -3' miRNA: 3'- -GCGCU-GCAGaGCCUGCUa-------GACGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 43332 | 0.67 | 0.698854 |
Target: 5'- cCGaCGACGag-UGGACGGUCUcgaacGCCGAGu -3' miRNA: 3'- -GC-GCUGCagaGCCUGCUAGA-----CGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 9615 | 0.68 | 0.677352 |
Target: 5'- uGCG-CGUCuUCGaGCGAUCaacGCCGAGg -3' miRNA: 3'- gCGCuGCAG-AGCcUGCUAGa--CGGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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