miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16422 3' -54.8 NC_004084.1 + 9615 0.68 0.677352
Target:  5'- uGCG-CGUCuUCGaGCGAUCaacGCCGAGg -3'
miRNA:   3'- gCGCuGCAG-AGCcUGCUAGa--CGGUUC- -5'
16422 3' -54.8 NC_004084.1 + 10189 0.68 0.665449
Target:  5'- aCGCGGCGggagacuUCUCaGGCGAUC-GCCuGGa -3'
miRNA:   3'- -GCGCUGC-------AGAGcCUGCUAGaCGGuUC- -5'
16422 3' -54.8 NC_004084.1 + 46706 0.68 0.655682
Target:  5'- gGCGACGUCUacCGcGACGAgugGUCGGGc -3'
miRNA:   3'- gCGCUGCAGA--GC-CUGCUagaCGGUUC- -5'
16422 3' -54.8 NC_004084.1 + 51605 0.68 0.633927
Target:  5'- uCGUGACGUCUCuGGCGAcaUCgauUGCCuucGAGa -3'
miRNA:   3'- -GCGCUGCAGAGcCUGCU--AG---ACGG---UUC- -5'
16422 3' -54.8 NC_004084.1 + 9313 0.69 0.594801
Target:  5'- uCGUGACGcUCUCGGAagaacuccgggugcuUGAUCccGCCGGGc -3'
miRNA:   3'- -GCGCUGC-AGAGCCU---------------GCUAGa-CGGUUC- -5'
16422 3' -54.8 NC_004084.1 + 8321 0.69 0.590472
Target:  5'- aGaCGGCGUCggcgCGGAUGAUCcaGCCGGc -3'
miRNA:   3'- gC-GCUGCAGa---GCCUGCUAGa-CGGUUc -5'
16422 3' -54.8 NC_004084.1 + 21599 0.69 0.579672
Target:  5'- gGCGAgcagcuggacCGUCUCgGGACGAUCUucgacuuggaccGCCAGc -3'
miRNA:   3'- gCGCU----------GCAGAG-CCUGCUAGA------------CGGUUc -5'
16422 3' -54.8 NC_004084.1 + 30232 0.7 0.568914
Target:  5'- gGCGAUGUC-CGcGGCGAcgUCgaacagGCCGAGg -3'
miRNA:   3'- gCGCUGCAGaGC-CUGCU--AGa-----CGGUUC- -5'
16422 3' -54.8 NC_004084.1 + 47017 0.7 0.558207
Target:  5'- uCGUGGCG-CUCagcguGGugGAagcggaUCUGCCAGGg -3'
miRNA:   3'- -GCGCUGCaGAG-----CCugCU------AGACGGUUC- -5'
16422 3' -54.8 NC_004084.1 + 8240 0.7 0.547558
Target:  5'- gGCGACGUCga-GACGAUCgacGCCGc- -3'
miRNA:   3'- gCGCUGCAGagcCUGCUAGa--CGGUuc -5'
16422 3' -54.8 NC_004084.1 + 3332 0.7 0.516027
Target:  5'- gCGCG-CGUCUCGGACGGgggaggagcgCgccgGCCAc- -3'
miRNA:   3'- -GCGCuGCAGAGCCUGCUa---------Ga---CGGUuc -5'
16422 3' -54.8 NC_004084.1 + 5277 0.71 0.505677
Target:  5'- uCGaCGACGUCccgcagCGGAUGGUCcGCCAu- -3'
miRNA:   3'- -GC-GCUGCAGa-----GCCUGCUAGaCGGUuc -5'
16422 3' -54.8 NC_004084.1 + 54263 0.71 0.475189
Target:  5'- cCGCGACGUCaUCGGcCG-UCUGgUAAGc -3'
miRNA:   3'- -GCGCUGCAG-AGCCuGCuAGACgGUUC- -5'
16422 3' -54.8 NC_004084.1 + 46860 0.72 0.436028
Target:  5'- cCGUGaACGUCUCcuguGGGCGGUCUGCgAu- -3'
miRNA:   3'- -GCGC-UGCAGAG----CCUGCUAGACGgUuc -5'
16422 3' -54.8 NC_004084.1 + 24558 0.73 0.389808
Target:  5'- uCGCGAgGUCUCcuGGAUGAaacCUGCCGAu -3'
miRNA:   3'- -GCGCUgCAGAG--CCUGCUa--GACGGUUc -5'
16422 3' -54.8 NC_004084.1 + 16557 0.73 0.389808
Target:  5'- aCGCGGC-UCUCGGGcCGAUCggUGCCGc- -3'
miRNA:   3'- -GCGCUGcAGAGCCU-GCUAG--ACGGUuc -5'
16422 3' -54.8 NC_004084.1 + 21946 0.74 0.33875
Target:  5'- uGuCGGCGUC-CGGACGAcgUCUccGCCGAGa -3'
miRNA:   3'- gC-GCUGCAGaGCCUGCU--AGA--CGGUUC- -5'
16422 3' -54.8 NC_004084.1 + 27091 1.08 0.001683
Target:  5'- uCGCGACGUCUCGGACGAUCUGCCAAGc -3'
miRNA:   3'- -GCGCUGCAGAGCCUGCUAGACGGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.